SIG4 (Vitis vinifera)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 VIT_13s0064g00190 T324040_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_13s0064g00190.t01 Sigma 70 87 156

Links

Other Sigma 70 family TFs
Other Vitis vinifera TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.857
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.857
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.857
SIGD Arabidopsis thaliana AT5G13730 N 0.857
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.831
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.831
Bra008807 Brassica rapa Bra008807 N 0.831
Bo9g166510 Brassica oleracea Bo9g166510 N 0.831
Bo2g011520 Brassica oleracea Bo2g011520 N 0.831
Bra023430 Brassica rapa Bra023430 N 0.831
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.829
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.817
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.803
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.800
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.800
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.797
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.789
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.789
Pm016510 Prunus mume Pm016510 N 0.789
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.775
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.775
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.775
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.775
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.775
29864.m001444 Ricinus communis 29864.m001444 N 0.771
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.761
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.761
mgf003626m Mimulus guttatus mgf003626m N 0.757
PK06863.1 Cannabis sativa PK06863.1 N 0.746
MDP0000235160 Malus domestica MDP0000235160 N 0.732
Ca_22857 Cicer arietinum Ca_22857 N 0.732
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.718
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.718
MDP0000266956 Malus domestica MDP0000266956 N 0.714
Cla017559 Citrullus lanatus Cla017559 N 0.704
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.704