Pm019782 (Prunus mume)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pm019782 T324063_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pm019782 Sigma 70 230 299

Links

Other Sigma 70 family TFs
Other Prunus mume TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.985
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.943
SIGE Vitis vinifera VIT_16s0050g02520 N 0.928
PK06897.1 Cannabis sativa PK06897.1 N 0.928
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.913
MDP0000831937 Malus domestica MDP0000831937 N 0.913
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.899
Cla004302 Citrullus lanatus Cla004302 N 0.899
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.896
mgf006107m Mimulus guttatus mgf006107m N 0.896
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.884
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.884
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.884
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.884
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.884
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.871
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.871
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.871
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.871
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.870
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.870
30169.m006532 Ricinus communis 30169.m006532 N 0.870
Ca_03953 Cicer arietinum Ca_03953 N 0.870
TCM_015349 Theobroma cacao TCM_015349 N 0.870
Bra026466 Brassica rapa Bra026466 N 0.857
Bo9g013770 Brassica oleracea Bo9g013770 N 0.857
SIGE Arabidopsis thaliana AT5G24120 N 0.857
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.857
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.857
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.855
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.855
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.855
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.855
mgf001401m Mimulus guttatus mgf001401m N 0.855
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.843
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.826
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.812
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.812
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.812
Bo7g097160 Brassica oleracea Bo7g097160 N 0.800
Bra009735 Brassica rapa Bra009735 N 0.800
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.797
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.783
PDK_20s1493901g001 Phoenix dactylifera PDK_20s1493901g001 N 0.727
Si021904m.g Setaria italica Si021904m.g N 0.710