30169.m006532 (Ricinus communis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 30169.m006532 T324075_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
30169.m006532 Sigma 70 269 340

Links

Other Sigma 70 family TFs
Other Ricinus communis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.928
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.928
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.928
TCM_015349 Theobroma cacao TCM_015349 N 0.928
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.913
Ca_03953 Cicer arietinum Ca_03953 N 0.913
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.913
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.913
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.899
PK06897.1 Cannabis sativa PK06897.1 N 0.899
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.899
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.899
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.899
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.884
SIGE Vitis vinifera VIT_16s0050g02520 N 0.884
Cla004302 Citrullus lanatus Cla004302 N 0.884
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.884
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.884
Pm019782 Prunus mume Pm019782 N 0.870
MDP0000831937 Malus domestica MDP0000831937 N 0.870
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.870
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.870
mgf006107m Mimulus guttatus mgf006107m N 0.870
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.870
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.870
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.855
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.855
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.855
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.855
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.855
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.855
mgf001401m Mimulus guttatus mgf001401m N 0.855
Bo9g013770 Brassica oleracea Bo9g013770 N 0.841
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.841
Bra026466 Brassica rapa Bra026466 N 0.841
SIGE Arabidopsis thaliana AT5G24120 N 0.841
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.841
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.841
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.812
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.812
Bra009735 Brassica rapa Bra009735 N 0.771
Bo7g097160 Brassica oleracea Bo7g097160 N 0.771
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.710
OB05G35020 Oryza brachyantha OB05G35020 N 0.710
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.710
Si021904m.g Setaria italica Si021904m.g N 0.710