cassava14033.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava14033.valid.m1 T324089_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava14033.valid.m1 Sigma 70 345 415

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_025741 Theobroma cacao TCM_025741 N 0.986
30148.m001412 Ricinus communis 30148.m001412 N 0.986
Cla007091 Citrullus lanatus Cla007091 N 0.986
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.986
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.986
PK16345.1 Cannabis sativa PK16345.1 N 0.986
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.986
SIGB Vitis vinifera VIT_15s0024g00640 N 0.972
Pm025497 Prunus mume Pm025497 N 0.972
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.972
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.972
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.972
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.972
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.972
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.972
mgf015824m Mimulus guttatus mgf015824m N 0.972
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.972
MDP0000157652 Malus domestica MDP0000157652 N 0.958
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.958
Bra030732 Brassica rapa Bra030732 N 0.958
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.958
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.958
SIGB Arabidopsis thaliana AT1G08540 N 0.958
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.958
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.958
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.958
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.958
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.958
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.944
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.944
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.944
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.944
Bo5g009070 Brassica oleracea Bo5g009070 N 0.930
Bra018617 Brassica rapa Bra018617 N 0.930
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.930
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.930
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.915
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.915
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.915
Ca_04693 Cicer arietinum Ca_04693 N 0.901
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.845
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.845
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.761
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.732
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.732
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.718
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.700