cassava18263.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava18263.valid.m1 T324090_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18263.valid.m1 Sigma 70 306 376

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003368 Ricinus communis 29794.m003368 N 0.887
Ca_14896 Cicer arietinum Ca_14896 N 0.859
TCM_037242 Theobroma cacao TCM_037242 N 0.845
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.845
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.831
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.831
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.831
SIGC Vitis vinifera VIT_04s0008g00600 N 0.817
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.817
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.817
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.817
SIGC Arabidopsis thaliana AT3G53920 N 0.817
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.803
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.803
Bo4g120510 Brassica oleracea Bo4g120510 N 0.803
PK05603.1 Cannabis sativa PK05603.1 N 0.803
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.803
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.803
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.803
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.789
Pm005208 Prunus mume Pm005208 N 0.789
Bra014857 Brassica rapa Bra014857 N 0.789
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.789
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.775
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.775
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.775
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.746
MDP0000315125 Malus domestica MDP0000315125 N 0.746
MDP0000135483 Malus domestica MDP0000135483 N 0.746
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.746
mgf012819m Mimulus guttatus mgf012819m N 0.732
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.704