cassava41980.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava41980.valid.m1 T324093_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41980.valid.m1 Sigma 70 269 339

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006897 Citrullus lanatus Cla006897 N 0.986
Ca_22622 Cicer arietinum Ca_22622 N 0.986
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.986
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.986
SIGA Vitis vinifera VIT_16s0039g00660 N 0.986
Pm019567 Prunus mume Pm019567 N 0.972
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.972
PK03826.1 Cannabis sativa PK03826.1 N 0.972
30148.m001468 Ricinus communis 30148.m001468 N 0.972
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.972
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.972
Ca_22625 Cicer arietinum Ca_22625 N 0.972
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.958
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.958
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.958
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.958
mgf016433m Mimulus guttatus mgf016433m N 0.944
mgf004750m Mimulus guttatus mgf004750m N 0.944
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.944
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.944
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.944
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.944
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.944
MDP0000934360 Malus domestica MDP0000934360 N 0.944
Bra008513 Brassica rapa Bra008513 N 0.944
MDP0000939377 Malus domestica MDP0000939377 N 0.944
Bo2g097550 Brassica oleracea Bo2g097550 N 0.944
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.944
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.944
TCM_025640 Theobroma cacao TCM_025640 N 0.944
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.944
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.944
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.944
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.944
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.944
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.930
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.930
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.930
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.930
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.930
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.930
SIGA Arabidopsis thaliana AT1G64860 N 0.930
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.930
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.930
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.915
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.901
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.901
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.873
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.859
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.843
OB08G14150 Oryza brachyantha OB08G14150 N 0.803
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.803
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.803
OBART08G03910 Oryza barthii OBART08G03910 N 0.803
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.803
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.803
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.803
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.803
OS08G0163400 Oryza sativa OS08G0163400 N 0.803
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.803
Si013608m.g Setaria italica Si013608m.g N 0.803
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.803
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.803
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.803
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.789
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.789
mgf015154m Mimulus guttatus mgf015154m N 0.775
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.775
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.764
F775_32229 Aegilops tauschii F775_32229 N 0.761
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.761
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.761
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.761
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.761
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.761