cassava43094.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava43094.valid.m1 T324094_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43094.valid.m1 Sigma 70 208 278

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29864.m001444 Ricinus communis 29864.m001444 N 0.817
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.775
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.775
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.775
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.761
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.761
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.761
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.761
Bo9g166510 Brassica oleracea Bo9g166510 N 0.761
Bo2g011520 Brassica oleracea Bo2g011520 N 0.761
Bra008807 Brassica rapa Bra008807 N 0.761
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.761
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.761
Bra023430 Brassica rapa Bra023430 N 0.761
SIGD Arabidopsis thaliana AT5G13730 N 0.761
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.746
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.746
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.746
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.732
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.732
Pm016510 Prunus mume Pm016510 N 0.732
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.732
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.732
PK06863.1 Cannabis sativa PK06863.1 N 0.718
mgf003626m Mimulus guttatus mgf003626m N 0.718
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.704