cassava7220.valid.m1 (Manihot esculenta)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 cassava7220.valid.m1 T324095_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava7220.valid.m1 Sigma 70 269 340

Links

Other Sigma 70 family TFs
Other Manihot esculenta TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK06897.1 Cannabis sativa PK06897.1 N 0.913
mgf006107m Mimulus guttatus mgf006107m N 0.884
mgf001401m Mimulus guttatus mgf001401m N 0.870
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.928
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.913
30169.m006532 Ricinus communis 30169.m006532 N 0.928
Pm019782 Prunus mume Pm019782 N 0.884
Cla004302 Citrullus lanatus Cla004302 N 0.928
Ca_03953 Cicer arietinum Ca_03953 N 0.942
SIGE Vitis vinifera VIT_16s0050g02520 N 0.928
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.739
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.739
TCM_015349 Theobroma cacao TCM_015349 N 0.957
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.870
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.884
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.870
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.870
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.855
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.913
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.913
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.899
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.754
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.942
MDP0000831937 Malus domestica MDP0000831937 N 0.913
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.841
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.942
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.942
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.942
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.942
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.870
Si021904m.g Setaria italica Si021904m.g N 0.754
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.739
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.855
GRMZM2G077436 Zea mays GRMZM2G077436 N 0.710
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.870
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.899
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.942
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.957
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.855
F775_08366 Aegilops tauschii F775_08366 N 0.739
Bra026466 Brassica rapa Bra026466 N 0.855
Bra009735 Brassica rapa Bra009735 N 0.786
Bo9g013770 Brassica oleracea Bo9g013770 N 0.855
Bo7g097160 Brassica oleracea Bo7g097160 N 0.786
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.725
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.725
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.739
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.913
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.928
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.943
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.913
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.886
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.725
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.725
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.725
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.725
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.725
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.725
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.725
OBART05G27520 Oryza barthii OBART05G27520 N 0.725
OB05G35020 Oryza brachyantha OB05G35020 N 0.754
SIGE Arabidopsis thaliana AT5G24120 N 0.855