Cucsa.124610 (Cucumis sativus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cucsa.124610 T324098_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.124610.1 Sigma 70 326 396

Links

Other Sigma 70 family TFs
Other Cucumis sativus TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.718
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.789
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.789
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.789
mgf007606m Mimulus guttatus mgf007606m N 0.775
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.803
30078.m002307 Ricinus communis 30078.m002307 N 0.845
Pm030137 Prunus mume Pm030137 N 0.831
Cla018594 Citrullus lanatus Cla018594 N 0.915
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.845
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.831
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.789
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.789
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.831
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.871
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.845
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.732
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.831
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.817
Ca_17153 Cicer arietinum Ca_17153 N 0.761
Ca_12052 Cicer arietinum Ca_12052 N 0.761
SIGF Vitis vinifera VIT_08s0040g01560 N 0.831
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.761
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.775
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.775
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.803
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.789
Bra017213 Brassica rapa Bra017213 N 0.775
Bo4g186560 Brassica oleracea Bo4g186560 N 0.789
SIGF Arabidopsis thaliana AT2G36990 N 0.789
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.803
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.704
TCM_022198 Theobroma cacao TCM_022198 N 0.803
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.873
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.831
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.831
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.873
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.775
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.718
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.757
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.704