estExt_fgenesh1_pg.C_280046 (Physcomitrella patens)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 estExt_fgenesh1_pg.C_280046 T324110_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_280046 Sigma 70 354 424

Links

Other Sigma 70 family TFs
Other Physcomitrella patens TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_gwp_gw1.C_280061 Physcomitrella patens estExt_gwp_gw1.C_280061 N 0.915
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.915
e_gw1.7.4.1 Physcomitrella patens e_gw1.7.4.1 N 0.887
ABW97889.1 Hemiselmis andersenii ABW97889.1 N 0.761
AFP65672.1 Chroomonas mesostigmatica AFP65672.1 N 0.761
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.718
53467 Aureococcus anophagefferens 53467 N 0.718
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.718
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.718
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.704
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.704
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.704
fgenesh2_pg.C_Chr_04000345 Micromonas sp RCC299 fgenesh2_pg.C_Chr_04000345 N 0.704
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.704
e_gw1.06.00.250.1 Ostreococcus tauri e_gw1.06.00.250.1 N 0.704
TTRE_0000710801 Trichuris trichiura TTRE_0000710801 N 0.704
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.704
PK16345.1 Cannabis sativa PK16345.1 N 0.704
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.704
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.704
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.704
mgf015824m Mimulus guttatus mgf015824m N 0.704
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.704
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.704
OSTLU_41331 Ostreococcus lucimarinus OSTLU_41331 N 0.704
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.704
Bra030732 Brassica rapa Bra030732 N 0.704
CMK044C Cyanidioschyzon merolae CMK044C N 0.704
TCM_025741 Theobroma cacao TCM_025741 N 0.704
Cla007091 Citrullus lanatus Cla007091 N 0.704
SIGB Arabidopsis thaliana AT1G08540 N 0.704
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.704
estExt_fgenesh1_pg.C_60156 Micromonas pusilla estExt_fgenesh1_pg.C_60156 N 0.704
e_gw1.6.1215.1 Ostreococcus RCC809 e_gw1.6.1215.1 N 0.704
30148.m001412 Ricinus communis 30148.m001412 N 0.704
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.704
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.704