CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
estExt_Genewise1Plus.C_60358
(
Fragilariopsis cylindrus
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04542 (Sigma70_r2)
IPR007627
estExt_Genewise1Plus.C_60358
T324119_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_60358
Sigma 70
161
231
LTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQART
Links
Other
Sigma 70
family TFs
Other
Fragilariopsis cylindrus
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Phatr3_J17029
Phaeodactylum tricornutum
Phatr3_J17029
N
0.915
Thaps33682
Thalassiosira pseudonana
Thaps33682
N
0.859
53467
Aureococcus anophagefferens
53467
N
0.732
TTRE_0000710801
Trichuris trichiura
TTRE_0000710801
N
0.704