Carubv10016920m.g (Capsella rubella)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Carubv10016920m.g T324164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016920m Sigma 70 346 416

Links

Other Sigma 70 family TFs
Other Capsella rubella TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.775
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.972
SIGC Arabidopsis thaliana AT3G53920 N 0.944
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.972
Bo4g120510 Brassica oleracea Bo4g120510 N 0.944
Bra014857 Brassica rapa Bra014857 N 0.915
PK05603.1 Cannabis sativa PK05603.1 N 0.775
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 1.000
Ca_14896 Cicer arietinum Ca_14896 N 0.761
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.845
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.845
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.845
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.958
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.761
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.718
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.761
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.817
MDP0000135483 Malus domestica MDP0000135483 N 0.718
MDP0000315125 Malus domestica MDP0000315125 N 0.718
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.803
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.732
mgf012819m Mimulus guttatus mgf012819m N 0.803
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.704
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
Pm005208 Prunus mume Pm005208 N 0.789
Pm005207 Prunus mume Pm005207 N 0.791
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.775
29794.m003368 Ricinus communis 29794.m003368 N 0.803
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.761
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.831
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.831
TCM_037242 Theobroma cacao TCM_037242 N 0.831
SIGC Vitis vinifera VIT_04s0008g00600 N 0.761