Ciclev10007968m.g (Citrus clementina)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Ciclev10007968m.g T324168_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007968m Sigma 70 300 370
Ciclev10008311m Sigma 70 300 370
Ciclev10008620m Sigma 70 300 370
Ciclev10008622m Sigma 70 300 370
Ciclev10008636m Sigma 70 300 370
Ciclev10008641m Sigma 70 300 370

Links

Other Sigma 70 family TFs
Other Citrus clementina TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 1.000
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.859
SIGC Arabidopsis thaliana AT3G53920 N 0.859
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.859
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.859
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.845
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.845
Bo4g120510 Brassica oleracea Bo4g120510 N 0.845
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.831
Bra014857 Brassica rapa Bra014857 N 0.831
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.831
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.831
Pm005207 Prunus mume Pm005207 N 0.814
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.803
29794.m003368 Ricinus communis 29794.m003368 N 0.803
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.803
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.789
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.775
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.775
TCM_037242 Theobroma cacao TCM_037242 N 0.775
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.775
Ca_14896 Cicer arietinum Ca_14896 N 0.761
PK05603.1 Cannabis sativa PK05603.1 N 0.761
SIGC Vitis vinifera VIT_04s0008g00600 N 0.761
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.761
Pm005208 Prunus mume Pm005208 N 0.761
mgf012819m Mimulus guttatus mgf012819m N 0.761
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.746
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.746
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.746
MDP0000135483 Malus domestica MDP0000135483 N 0.732
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.732
MDP0000315125 Malus domestica MDP0000315125 N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.718