Ciclev10011376m.g (Citrus clementina)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Ciclev10011376m.g T324169_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011376m Sigma 70 333 403
Ciclev10011393m Sigma 70 325 395
Ciclev10011397m Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Citrus clementina TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.986
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.901
Cla018594 Citrullus lanatus Cla018594 N 0.873
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.873
Pm030137 Prunus mume Pm030137 N 0.873
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.873
30078.m002307 Ricinus communis 30078.m002307 N 0.859
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.859
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.859
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.845
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.845
SIGF Vitis vinifera VIT_08s0040g01560 N 0.845
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.831
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.831
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.831
Bo4g186560 Brassica oleracea Bo4g186560 N 0.817
SIGF Arabidopsis thaliana AT2G36990 N 0.817
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.817
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.817
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.817
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.817
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.817
TCM_022198 Theobroma cacao TCM_022198 N 0.817
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.803
Bra017213 Brassica rapa Bra017213 N 0.803
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.803
Ca_12052 Cicer arietinum Ca_12052 N 0.789
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.789
mgf007606m Mimulus guttatus mgf007606m N 0.789
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.775
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.775
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.775
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.761
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.757
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.746
Ca_17153 Cicer arietinum Ca_17153 N 0.746
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.735
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.732
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.732
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.732
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.732
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.721
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.718