Ciclev10033747m.g (Citrus clementina)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Ciclev10033747m.g T324172_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10033747m Sigma 70 203 273

Links

Other Sigma 70 family TFs
Other Citrus clementina TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.986
Bra023430 Brassica rapa Bra023430 N 0.845
Bra008807 Brassica rapa Bra008807 N 0.845
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.845
Bo9g166510 Brassica oleracea Bo9g166510 N 0.845
Bo2g011520 Brassica oleracea Bo2g011520 N 0.845
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.831
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.831
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.831
SIGD Arabidopsis thaliana AT5G13730 N 0.831
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.831
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.817
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.803
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.803
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.789
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.775
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.775
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.775
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.775
Pm016510 Prunus mume Pm016510 N 0.775
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.761
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.761
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.732
PK06863.1 Cannabis sativa PK06863.1 N 0.732
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.732
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.732
MDP0000235160 Malus domestica MDP0000235160 N 0.718
mgf003626m Mimulus guttatus mgf003626m N 0.718
29864.m001444 Ricinus communis 29864.m001444 N 0.704
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.704