fgenesh2_pg.C_Chr_04000345 (Micromonas sp RCC299)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 fgenesh2_pg.C_Chr_04000345 T324185_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
100150 Sigma 70 349 419

Links

Other Sigma 70 family TFs
Other Micromonas sp RCC299 TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_fgenesh1_pg.C_60156 Micromonas pusilla estExt_fgenesh1_pg.C_60156 N 1.000
e_gw1.6.1215.1 Ostreococcus RCC809 e_gw1.6.1215.1 N 0.944
OSTLU_41331 Ostreococcus lucimarinus OSTLU_41331 N 0.944
e_gw1.06.00.250.1 Ostreococcus tauri e_gw1.06.00.250.1 N 0.944
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.746
ABW97889.1 Hemiselmis andersenii ABW97889.1 N 0.732
AFP65672.1 Chroomonas mesostigmatica AFP65672.1 N 0.732
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.704
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.704
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.704
CMK044C Cyanidioschyzon merolae CMK044C N 0.704
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.704
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704