gene13107-v1.0-hybrid (Fragaria vesca)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 gene13107-v1.0-hybrid T324189_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13107.1-v1.0-hybrid Sigma 70 286 357

Links

Other Sigma 70 family TFs
Other Fragaria vesca TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1493901g001 Phoenix dactylifera PDK_20s1493901g001 N 0.712
mgf006107m Mimulus guttatus mgf006107m N 0.884
mgf001401m Mimulus guttatus mgf001401m N 0.870
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.942
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.942
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.870
30169.m006532 Ricinus communis 30169.m006532 N 0.928
Pm019782 Prunus mume Pm019782 N 0.913
Cla004302 Citrullus lanatus Cla004302 N 0.942
Ca_03953 Cicer arietinum Ca_03953 N 0.928
SIGE Vitis vinifera VIT_16s0050g02520 N 0.957
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.725
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.725
TCM_015349 Theobroma cacao TCM_015349 N 0.942
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.884
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.899
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.899
PK06897.1 Cannabis sativa PK06897.1 N 0.942
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.884
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.913
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.913
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.928
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.739
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.942
MDP0000831937 Malus domestica MDP0000831937 N 0.942
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.841
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.957
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.913
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.942
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.899
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.884
Si021904m.g Setaria italica Si021904m.g N 0.739
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.710
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.855
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.841
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.870
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.928
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.942
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.884
F775_08366 Aegilops tauschii F775_08366 N 0.725
Bra026466 Brassica rapa Bra026466 N 0.884
Bra009735 Brassica rapa Bra009735 N 0.814
Bo9g013770 Brassica oleracea Bo9g013770 N 0.884
Bo7g097160 Brassica oleracea Bo7g097160 N 0.814
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.710
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.725
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.899
OB05G35020 Oryza brachyantha OB05G35020 N 0.739
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.725
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.957
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.943
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.942
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.900
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.710
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.710
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.710
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.710
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.710
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.710
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.710
OBART05G27520 Oryza barthii OBART05G27520 N 0.710
SIGE Arabidopsis thaliana AT5G24120 N 0.884