gene29494-v1.0-hybrid (Fragaria vesca)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 gene29494-v1.0-hybrid T324191_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna29494.1-v1.0-hybrid Sigma 70 219 289

Links

Other Sigma 70 family TFs
Other Fragaria vesca TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm016510 Prunus mume Pm016510 N 0.930
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.930
MDP0000235160 Malus domestica MDP0000235160 N 0.859
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.831
MDP0000266956 Malus domestica MDP0000266956 N 0.831
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.817
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.817
mgf003626m Mimulus guttatus mgf003626m N 0.817
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.817
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.803
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.803
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.803
Bra023430 Brassica rapa Bra023430 N 0.789
Bra008807 Brassica rapa Bra008807 N 0.789
Bo2g011520 Brassica oleracea Bo2g011520 N 0.789
Bo9g166510 Brassica oleracea Bo9g166510 N 0.789
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.789
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.775
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.775
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.775
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.775
SIGD Arabidopsis thaliana AT5G13730 N 0.775
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.775
PK06863.1 Cannabis sativa PK06863.1 N 0.761
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.761
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.718
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.718
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.718
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.718
29864.m001444 Ricinus communis 29864.m001444 N 0.718
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.718
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.704
Ca_22857 Cicer arietinum Ca_22857 N 0.704
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.704