Gorai.006G165200 (Gossypium raimondii)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Gorai.006G165200 T324195_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G165200.1 Sigma 70 328 398
Gorai.006G165200.2 Sigma 70 271 341
Gorai.006G165200.3 Sigma 70 328 398
Gorai.006G165200.4 Sigma 70 218 288

Links

Other Sigma 70 family TFs
Other Gossypium raimondii TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.718
mgf007606m Mimulus guttatus mgf007606m N 0.803
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.721
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.735
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.775
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.775
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.775
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.775
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.746
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.761
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.803
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.859
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.784
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.803
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.775
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.732
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.746
30078.m002307 Ricinus communis 30078.m002307 N 0.803
SIGF Arabidopsis thaliana AT2G36990 N 0.775
Bo4g186560 Brassica oleracea Bo4g186560 N 0.775
Bra017213 Brassica rapa Bra017213 N 0.761
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.775
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.704
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.703
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.704
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.789
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.761
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.803
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.789
TCM_022198 Theobroma cacao TCM_022198 N 0.831
SIGF Vitis vinifera VIT_08s0040g01560 N 0.775
Cla018594 Citrullus lanatus Cla018594 N 0.761
Pm030137 Prunus mume Pm030137 N 0.803
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.732