MDP0000315125 (Malus domestica)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 MDP0000315125 T324217_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000315125 Sigma 70 335 405

Links

Other Sigma 70 family TFs
Other Malus domestica TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000135483 Malus domestica MDP0000135483 N 1.000
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.901
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.887
Pm005208 Prunus mume Pm005208 N 0.873
PK05603.1 Cannabis sativa PK05603.1 N 0.831
SIGC Vitis vinifera VIT_04s0008g00600 N 0.775
TCM_037242 Theobroma cacao TCM_037242 N 0.761
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.761
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.761
Ca_14896 Cicer arietinum Ca_14896 N 0.761
mgf012819m Mimulus guttatus mgf012819m N 0.746
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.746
29794.m003368 Ricinus communis 29794.m003368 N 0.746
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.746
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.746
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.732
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.732
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.732
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.732
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.732
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.732
SIGC Arabidopsis thaliana AT3G53920 N 0.718
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.718
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.718
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.718
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.718
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.718
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.718
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
Bo4g120510 Brassica oleracea Bo4g120510 N 0.704