orange1.1g010092m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g010092m.g T324224_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g010092m Sigma 70 279 350
orange1.1g010284m Sigma 70 279 350
orange1.1g010308m Sigma 70 279 350
orange1.1g010327m Sigma 70 279 350
orange1.1g010338m Sigma 70 279 350

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 1.000
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.971
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.942
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.942
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.942
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.942
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.942
MDP0000831937 Malus domestica MDP0000831937 N 0.942
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.942
PK06897.1 Cannabis sativa PK06897.1 N 0.942
TCM_015349 Theobroma cacao TCM_015349 N 0.928
SIGE Vitis vinifera VIT_16s0050g02520 N 0.928
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.928
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.928
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.928
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.913
Cla004302 Citrullus lanatus Cla004302 N 0.913
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.913
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.913
Ca_03953 Cicer arietinum Ca_03953 N 0.913
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.899
30169.m006532 Ricinus communis 30169.m006532 N 0.899
mgf006107m Mimulus guttatus mgf006107m N 0.899
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.884
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.884
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.884
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.884
Pm019782 Prunus mume Pm019782 N 0.884
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.884
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.884
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.870
mgf001401m Mimulus guttatus mgf001401m N 0.870
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.870
SIGE Arabidopsis thaliana AT5G24120 N 0.870
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.870
Bra026466 Brassica rapa Bra026466 N 0.870
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.870
Bo9g013770 Brassica oleracea Bo9g013770 N 0.870
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.855
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.826
Bo7g097160 Brassica oleracea Bo7g097160 N 0.812
Bra009735 Brassica rapa Bra009735 N 0.812
Si021904m.g Setaria italica Si021904m.g N 0.739
OB05G35020 Oryza brachyantha OB05G35020 N 0.739
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.739
PDK_20s1493901g001 Phoenix dactylifera PDK_20s1493901g001 N 0.727
F775_08366 Aegilops tauschii F775_08366 N 0.725
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.725
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.725
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.725
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.725
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.710
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.710
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.710
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.710
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.710
OBART05G27520 Oryza barthii OBART05G27520 N 0.710
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.710
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.710
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.710
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.710