Pavir.Fb00544 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Fb00544 T324227_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00544.1.p Sigma 70 260 330

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29814.m000736 Ricinus communis 29814.m000736 I 0.000
30170.m013927 Ricinus communis 30170.m013927 I 0.000
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.000
BGIOSGA000003 Oryza indica BGIOSGA000003 N 0.000
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.000
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.000
Ca_01522 Cicer arietinum Ca_01522 I 0.000
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.000
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.000
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.000
Cla004431 Citrullus lanatus Cla004431 I 0.000
Cla020946 Citrullus lanatus Cla020946 I 0.000
Cla021015 Citrullus lanatus Cla021015 I 0.000
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.000
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.000
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.000
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.000
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.000
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.000
GRMZM2G369799 Zea mays GRMZM2G369799 I 0.000
LPERR01G40230 Leersia perrieri LPERR01G40230 I 0.000
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.000
Lus10010055.g Linum usitatissimum Lus10010055.g I 0.000
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.000
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.000
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.000
MDP0000298689 Malus domestica MDP0000298689 I 0.000
mgf020432m Mimulus guttatus mgf020432m I 0.000
mgf023922m Mimulus guttatus mgf023922m I 0.000
OB01G55080 Oryza brachyantha OB01G55080 N 0.000
OBART01G45880 Oryza barthii OBART01G45880 N 0.000
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N 0.000
OLONG_011153 Oryza longistaminata OLONG_011153 N 0.000
ONIVA01G52120 Oryza nivara ONIVA01G52120 N 0.000
OPUNC01G44800 Oryza punctata OPUNC01G44800 N 0.000
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.000
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.000
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N 0.000
OS01G0977300 Oryza sativa OS01G0977300 N 0.000
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I 0.000
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I 0.000
Pavir.J33236 Panicum virgatum Pavir.J33236 I 0.000
PK01153.1 Cannabis sativa PK01153.1 I 0.000
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.000
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.000
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.000
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.000
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.000
Sb0088s002210 Sorghum bicolor Sb0088s002210 N 0.000
Si022959m.g Setaria italica Si022959m.g I 0.000
TCM_007138 Theobroma cacao TCM_007138 I 0.000
TCM_042474 Theobroma cacao TCM_042474 I 0.000
Traes_4AS_A79A68739 Triticum aestivum Traes_4AS_A79A68739 N 0.000
Traes_4BL_545A5716E Triticum aestivum Traes_4BL_545A5716E I 0.000
Traes_4DL_D41CB81EA Triticum aestivum Traes_4DL_D41CB81EA I 0.000
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.000