Pavir.Hb00670 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Hb00670 T324229_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb00670.1.p Sigma 70 300 370

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.704
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.943
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N 0.859
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.943
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.943
TCM_025741 Theobroma cacao TCM_025741 N 0.704
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.704
Si035112m.g Setaria italica Si035112m.g N 0.887
Si026193m.g Setaria italica Si026193m.g N 0.986
Sb01g039810 Sorghum bicolor Sb01g039810 N 0.873
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.986
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.704
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.943
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N 0.859
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.943
PK16345.1 Cannabis sativa PK16345.1 N 0.704
Pavir.J38369 Panicum virgatum Pavir.J38369 N 0.887
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.986
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.887
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.718
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.718
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.704
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.704
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.718
30148.m001412 Ricinus communis 30148.m001412 N 0.704
Cla007091 Citrullus lanatus Cla007091 N 0.704
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.704
OS11G0448400 Oryza sativa OS11G0448400 N 0.972
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.972
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.718
GRMZM2G164084 Zea mays GRMZM2G164084 N 0.859
GRMZM2G143392 Zea mays GRMZM2G143392 N 0.958
GRMZM2G100086 Zea mays GRMZM2G100086 N 0.859
GRMZM2G003182 Zea mays GRMZM2G003182 N 0.859
F775_32094 Aegilops tauschii F775_32094 N 0.859
F775_14570 Aegilops tauschii F775_14570 N 0.943
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.943
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N 0.873
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.972
MLOC_59299 Hordeum vulgare MLOC_59299 N 0.859
OB03G22220 Oryza brachyantha OB03G22220 N 0.873
OB11G19800 Oryza brachyantha OB11G19800 N 0.972
OS03G0271100 Oryza sativa OS03G0271100 N 0.873
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.972
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.972
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N 0.873
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.958
OPUNC03G11670 Oryza punctata OPUNC03G11670 N 0.873
ONIVA03G13860 Oryza nivara ONIVA03G13860 N 0.873
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.972
OLONG_007716 Oryza longistaminata OLONG_007716 N 0.873
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.972
OBART03G12110 Oryza barthii OBART03G12110 N 0.873
BGIOSGA012312 Oryza indica BGIOSGA012312 N 0.873