Pavir.J05262 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.J05262 T324234_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05262.1.p Sigma 70 300 370
Pavir.J05262.2.p Sigma 70 300 370

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si026193m.g Setaria italica Si026193m.g N 1.000
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 1.000
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.986
OB11G19800 Oryza brachyantha OB11G19800 N 0.986
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.986
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.986
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.986
OS11G0448400 Oryza sativa OS11G0448400 N 0.986
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.986
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.986
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.986
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.972
GRMZM2G143392 Zea mays GRMZM2G143392 N 0.972
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.957
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.957
F775_14570 Aegilops tauschii F775_14570 N 0.957
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.957
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.957
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.957
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.957
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.900
Si035112m.g Setaria italica Si035112m.g N 0.886
Pavir.J38369 Panicum virgatum Pavir.J38369 N 0.873
Sb01g039810 Sorghum bicolor Sb01g039810 N 0.859
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N 0.859
BGIOSGA012312 Oryza indica BGIOSGA012312 N 0.859
OPUNC03G11670 Oryza punctata OPUNC03G11670 N 0.859
OLONG_007716 Oryza longistaminata OLONG_007716 N 0.859
OBART03G12110 Oryza barthii OBART03G12110 N 0.859
OB03G22220 Oryza brachyantha OB03G22220 N 0.859
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N 0.859
ONIVA03G13860 Oryza nivara ONIVA03G13860 N 0.859
OS03G0271100 Oryza sativa OS03G0271100 N 0.859
GRMZM2G164084 Zea mays GRMZM2G164084 N 0.857
GRMZM2G100086 Zea mays GRMZM2G100086 N 0.857
GRMZM2G003182 Zea mays GRMZM2G003182 N 0.857
MLOC_59299 Hordeum vulgare MLOC_59299 N 0.845
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N 0.845
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N 0.845
F775_32094 Aegilops tauschii F775_32094 N 0.845
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.718
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.718
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.718
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.718
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.704
PK16345.1 Cannabis sativa PK16345.1 N 0.704
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.704
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.704
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.704
TCM_025741 Theobroma cacao TCM_025741 N 0.704
Cla007091 Citrullus lanatus Cla007091 N 0.704
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.704
30148.m001412 Ricinus communis 30148.m001412 N 0.704
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.704