AFP65672.1 (Chroomonas mesostigmatica)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 AFP65672.1 T324259_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AFP65672.1 Sigma 70 212 282

Links

Other Sigma 70 family TFs
Other Chroomonas mesostigmatica TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
53467 Aureococcus anophagefferens 53467 N 0.761
ABW97889.1 Hemiselmis andersenii ABW97889.1 N 1.000
CMK044C Cyanidioschyzon merolae CMK044C N 0.746
CMR165C Cyanidioschyzon merolae CMR165C N 0.761
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.761
estExt_fgenesh1_pg.C_60156 Micromonas pusilla estExt_fgenesh1_pg.C_60156 N 0.732
estExt_fgenesh2_kg.C_60284 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_60284 N 0.718
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
estExt_gwp_gw1.C_280061 Physcomitrella patens estExt_gwp_gw1.C_280061 N 0.761
e_gw1.06.00.250.1 Ostreococcus tauri e_gw1.06.00.250.1 N 0.718
e_gw1.6.1215.1 Ostreococcus RCC809 e_gw1.6.1215.1 N 0.732
e_gw1.7.4.1 Physcomitrella patens e_gw1.7.4.1 N 0.732
fgenesh2_pg.C_Chr_04000345 Micromonas sp RCC299 fgenesh2_pg.C_Chr_04000345 N 0.732
OSTLU_41331 Ostreococcus lucimarinus OSTLU_41331 N 0.718
Phatr3_J9312 Phaeodactylum tricornutum Phatr3_J9312 N 0.732
Thaps33891 Thalassiosira pseudonana Thaps33891 N 0.718
TTRE_0000710801 Trichuris trichiura TTRE_0000710801 N 0.732