CpipJ_CPIJ018354 (Culex pipiens)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 CpipJ_CPIJ018354 T324341_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Smad3
M00192_2.00
Mus musculus
NNNNNMGMCN

NGKCKNNNNN
PBM
Badis et al.(2009)
Smad3_3805
0.846 0.846
SMAD3
M03482_2.00
Homo sapiens
YGTCTAGACA

TGTCTAGACR
SELEX
Jolma et al.(2013)
SMAD3_1
0.846 0.846
SMAD3
M09380_2.00
Homo sapiens
NBCTSHCWSCWB

VWGSWGDSAGVN
Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B
0.846 0.846
Smad3
M09384_2.00
Mus musculus
NBCTSHCWSCWB

VWGSWGDSAGVN
Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B
0.846 0.846
Smad3
M09637_2.00
Mus musculus
BYAGMCWN

NWGKCTRV
Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673
0.846 0.846
SMAD3
M11283_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6_01
0.846 0.846
SMAD3
M11284_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6_02
0.846 0.846
SMAD3
M11285_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6
0.846 0.846
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ018354-RA SMAD 203 241

Links

Other SMAD family TFs
Other Culex pipiens TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.000
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.000
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.000
Ca_08043 Cicer arietinum Ca_08043 I 0.000
mgf004823m Mimulus guttatus mgf004823m I 0.000
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.000
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.000
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.000
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.000
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.000
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.000
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.000
Pavir.Eb00490 Panicum virgatum Pavir.Eb00490 N 0.000
Pavir.Ia01166 Panicum virgatum Pavir.Ia01166 N 0.000
Pavir.Ib04118 Panicum virgatum Pavir.Ib04118 N 0.000
Si036471m.g Setaria italica Si036471m.g N 0.000
Si002375m.g Setaria italica Si002375m.g N 0.000
Sb03g005080 Sorghum bicolor Sb03g005080 N 0.000
Sb01g013670 Sorghum bicolor Sb01g013670 N 0.000
MLOC_34636 Hordeum vulgare MLOC_34636 N 0.000
GRMZM2G163291 Zea mays GRMZM2G163291 N 0.000
GRMZM2G095239 Zea mays GRMZM2G095239 N 0.000
Pavir.J13527 Panicum virgatum Pavir.J13527 N 0.000