DAPPUDRAFT_244987 (Daphnia pulex)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 DAPPUDRAFT_244987 T324442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR

YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.930 0.930
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.837 0.837
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN

NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.837 0.837
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.837 0.837
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.837 0.837
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.837 0.837
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.837 0.837
Nfib
M09381_2.00
Mus musculus
BVWGCCARV

BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.837 0.837
NFIA
M11282_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.837 0.837
NFIB
M11280_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.837 0.837
NFIB
M11281_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.837 0.837
Nfia
M11291_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.837 0.837
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN

NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.837 0.837
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA

TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.791 0.791
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN

NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.791 0.791
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN

NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.791 0.791
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR

YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.791 0.791
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN

NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.791 0.791
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN

NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.791 0.791
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN

NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.767 0.767
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN

NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.767 0.767
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV

BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.767 0.767
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN

NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.767 0.767
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV

BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.767 0.767
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR

YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.767 0.767
NFIC
M11278_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.767 0.767
NFIC
M11279_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.767 0.767
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX79416 SMAD 1 50

Links

Other SMAD family TFs
Other Daphnia pulex TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI010036 Acyrthosiphon pisum ACYPI010036 I 0.953
ENSAMEG00000011711 Ailuropoda melanoleuca ENSAMEG00000011711 I 0.837
ENSAMEG00000005577 Ailuropoda melanoleuca ENSAMEG00000005577 I 0.767
Alligator_sinensis_CCG015706.1 Alligator sinensis Alligator_sinensis_CCG015706.1 I 0.837
ENSAPLG00000003407 Anas platyrhynchos ENSAPLG00000003407 I 0.837
ANCCEY_12825 Ancylostoma ceylanicum ANCCEY_12825 N 0.791
ENSACAG00000017087 Anolis carolinensis ENSACAG00000017087 I 0.837
ACUA012405 Anopheles culicifacies ACUA012405 I 0.814
AMEC001904 Anopheles melas AMEC001904 I 0.814
GB44961 Apis mellifera GB44961 I 0.907
ASU_05356 Ascaris suum ASU_05356 I 0.814
ENSAMXG00000017908 Astyanax mexicanus ENSAMXG00000017908 I 0.837
ENSAMXG00000015498 Astyanax mexicanus ENSAMXG00000015498 I 0.814
ENSAMXG00000003579 Astyanax mexicanus ENSAMXG00000003579 I 0.767
ACEP19823 Atta cephalotes ACEP19823 I 0.907
BGIBMGA013352 Bombyx mori BGIBMGA013352 I 0.930
yakG029648 Bos grunniens yakG029648 I 0.837
ENSP00000342859-D1 Bos grunniens ENSP00000342859-D1 I 0.767
NFIC Bos taurus ENSBTAG00000008520 I 0.767
NFIA Bos taurus ENSBTAG00000000074 I 0.837
gw.438.21.1 Branchiostoma floridae gw.438.21.1 I 0.767
fgenesh2_pg.scaffold_342000046 Branchiostoma floridae fgenesh2_pg.scaffold_342000046 I 0.767
BXY_1713100 Bursaphelenchus xylophilus BXY_1713100 I 0.791
NFIA Callithrix jacchus ENSCJAG00000016165 I 0.837
Aan_R000637 Calypte anna Aan_R000637 I 0.837
Aan_R011678 Calypte anna Aan_R011678 I 0.791
Cflo_01240--XP_393740.3_APIME Camponotus floridanus Cflo_01240--XP_393740.3_APIME I 0.907
NFIC Canis familiaris ENSCAFG00000019246 I 0.767
NFIA Canis familiaris ENSCAFG00000023117 I 0.837
NFIA Cavia porcellus ENSCPOG00000010091 I 0.837
Cmyd_10002384 Chelonia mydas Cmyd_10002384 I 0.791
ENSCSAG00000001333 Chlorocebus sabaeus ENSCSAG00000001333 I 0.837
ENSCHOG00000006447 Choloepus hoffmanni ENSCHOG00000006447 I 0.767
CGOC_0000769801 Cylicostephanus goldi CGOC_0000769801 I 0.723
nfia Danio rerio ENSDARG00000062420 I 0.837
nfixb Danio rerio ENSDARG00000061836 I 0.814
nfic Danio rerio ENSDARG00000043210 I 0.791
DAPPUDRAFT_52430 Daphnia pulex DAPPUDRAFT_52430 I 0.953
ENSDNOG00000002190 Dasypus novemcinctus ENSDNOG00000002190 I 0.837
NFIC Dasypus novemcinctus ENSDNOG00000042450 I 0.767
YQE_09289 Dendroctonus ponderosae YQE_09289 I 0.930
Nfia Dipodomys ordii ENSDORG00000005150 I 0.837
DME_0000465201 Dracunculus medinensis DME_0000465201 I 0.837
GF21690 Drosophila ananassae FBgn0098690 I 0.930
GG16454 Drosophila erecta FBgn0108685 I 0.930
GH23980 Drosophila grimshawi FBgn0131437 I 0.930
NfI Drosophila melanogaster FBgn0042696 D 0.930
GI14107 Drosophila mojavensis FBgn0136861 I 0.930
GL18152 Drosophila persimilis FBgn0155755 I 0.930
GM26787 Drosophila sechellia FBgn0181640 I 0.930
GD24387 Drosophila simulans FBgn0195728 I 0.930
GJ21334 Drosophila virilis FBgn0208464 I 0.930
GK13608 Drosophila willistoni FBgn0215616 I 0.930
GE14520 Drosophila yakuba FBgn0232122 I 0.930
NFIC Echinops telfairi ENSETEG00000006952 I 0.767
NFIA Echinops telfairi ENSETEG00000017068 I 0.837
NFIA Equus caballus ENSECAG00000015574 I 0.745
NFIB Erinaceus europaeus ENSEEUG00000012997 I 0.837
NFIA Erinaceus europaeus ENSEEUG00000015082 I 0.837
NFIC Felis catus ENSFCAG00000000880 I 0.767
NFIA Felis catus ENSFCAG00000005997 I 0.837
ENSFALG00000012430 Ficedula albicollis ENSFALG00000012430 I 0.837
ENSGMOG00000019827 Gadus morhua ENSGMOG00000019827 I 0.837
cNFI-A Gallus gallus ENSGALG00000010924 I 0.837
nfia Gasterosteus aculeatus ENSGACG00000003153 I 0.837
NFIA Gorilla gorilla ENSGGOG00000027445 I 0.837
HHAL002936-PA Halyomorpha halys HHAL002936-PA I 0.907
Hsal_10682--XP_393740.3_APIME Harpegnathos saltator Hsal_10682--XP_393740.3_APIME I 0.907
HMEL003745 Heliconius melpomene HMEL003745 I 0.930
HelroG141560 Helobdella robusta HelroG141560 I 0.837
NFIA Homo sapiens ENSG00000162599 D 0.837
NFIX Homo sapiens ENSG00000008441 D 0.744
NFIB Homo sapiens ENSG00000147862 D 0.791
ENSSTOG00000024218 Ictidomys tridecemlineatus ENSSTOG00000024218 I 0.767
ISCW004440 Ixodes scapularis ISCW004440 I 0.930
ENSLACG00000004873 Latimeria chalumnae ENSLACG00000004873 I 0.837
ENSLACG00000016266 Latimeria chalumnae ENSLACG00000016266 I 0.814
ENSLOCG00000001284 Lepisosteus oculatus ENSLOCG00000001284 I 0.791
ENSLOCG00000009919 Lepisosteus oculatus ENSLOCG00000009919 I 0.837
ENSLOCG00000007997 Lepisosteus oculatus ENSLOCG00000007997 I 0.814
LDEC011938 Leptinotarsa decemlineata LDEC011938 I 0.930
LotgiG215606 Lottia gigantea LotgiG215606 I 0.884
ENSLAFG00000025943 Loxodonta africana ENSLAFG00000025943 I 0.837
NFIC Loxodonta africana ENSLAFG00000007134 I 0.767
LCUP004691 Lucilia cuprina LCUP004691 I 0.953
LLOJ009491 Lutzomyia longipalpis LLOJ009491 I 0.930
ENSP00000383958 Macaca fascicularis ENSP00000383958 I 0.837
NFIX Macaca mulatta ENSMMUG00000019292 I 0.791
NFIA Macaca mulatta ENSMMUG00000013840 I 0.837
ENSMEUG00000015063 Macropus eugenii ENSMEUG00000015063 I 0.837
MESCA001033 Megaselia scalaris MESCA001033 I 0.930
ENSMGAG00000011639 Meleagris gallopavo ENSMGAG00000011639 I 0.837
MhA1_Contig410.frz3.gene15 Meloidogyne hapla MhA1_Contig410.frz3.gene15 I 0.814
ENSMICG00000005075 Microcebus murinus ENSMICG00000005075 I 0.837
NFIA Monodelphis domestica ENSMODG00000002475 I 0.837
MDOA004700 Musca domestica MDOA004700 I 0.953
ENSMPUG00000007524 Mustela putorius furo ENSMPUG00000007524 I 0.837
ENSMPUG00000003850 Mustela putorius furo ENSMPUG00000003850 I 0.767
Nfic Mus musculus ENSMUSG00000055053 D 0.767
Nfia Mus musculus ENSMUSG00000028565 D 0.837
Myotis_brandtii_Nfia_10021409 Myotis brandtii Myotis_brandtii_Nfia_10021409 I 0.837
Myotis_brandtii_NFIC_10016328 Myotis brandtii Myotis_brandtii_NFIC_10016328 I 0.767
ENSMLUG00000024011 Myotis lucifugus ENSMLUG00000024011 I 0.837
NFIC Myotis lucifugus ENSMLUG00000006476 I 0.767
NV15784 Nasonia vitripennis NV15784 I 0.907
NECAME_05767 Necator americanus NECAME_05767 N 0.791
ENSONIG00000018077 Oreochromis niloticus ENSONIG00000018077 I 0.814
ENSONIG00000013455 Oreochromis niloticus ENSONIG00000013455 I 0.837
ENSONIG00000007717 Oreochromis niloticus ENSONIG00000007717 I 0.791
ENSONIG00000006575 Oreochromis niloticus ENSONIG00000006575 I 0.791
ENSONIG00000004623 Oreochromis niloticus ENSONIG00000004623 I 0.837
ENSOANG00000012488 Ornithorhynchus anatinus ENSOANG00000012488 I 0.837
NFIA Oryctolagus cuniculus ENSOCUG00000005893 I 0.837
nfia Oryzias latipes ENSORLG00000003529 I 0.837
NFIX Oryzias latipes ENSORLG00000003734 I 0.814
NFIB Oryzias latipes ENSORLG00000005185 I 0.837
ENSORLG00000016601 Oryzias latipes ENSORLG00000016601 I 0.791
NFIC Otolemur garnettii ENSOGAG00000026321 I 0.767
ENSOARG00000008860 Ovis aries ENSOARG00000008860 I 0.837
NFIA Pan troglodytes ENSPTRG00000000802 I 0.837
ENSPSIG00000005327 Pelodiscus sinensis ENSPSIG00000005327 I 0.837
ENSPFOG00000000946 Poecilia formosa ENSPFOG00000000946 I 0.791
ENSPFOG00000013453 Poecilia formosa ENSPFOG00000013453 I 0.814
ENSPFOG00000008414 Poecilia formosa ENSPFOG00000008414 I 0.814
ENSPFOG00000000936 Poecilia formosa ENSPFOG00000000936 I 0.791
ENSPFOG00000000065 Poecilia formosa ENSPFOG00000000065 I 0.837
Pvit_08116 Pogona vitticeps Pvit_08116 I 0.791
ENSPPYG00000001290 Pongo abelii ENSPPYG00000001290 I 0.837
NFIC Procavia capensis ENSPCAG00000002205 I 0.767
NFIC Pteropus vampyrus ENSPVAG00000004084 I 0.767
NFIA Pteropus vampyrus ENSPVAG00000005805 I 0.837
Nfic Rattus norvegicus ENSRNOG00000004505 I 0.767
Nfia Rattus norvegicus ENSRNOG00000006966 D 0.837
ENSSHAG00000009432 Sarcophilus harrisii ENSSHAG00000009432 I 0.837
SINV21439 Solenopsis invicta SINV21439 I 0.907
NFIA Sorex araneus ENSSARG00000004476 I 0.837
L596_g9152 Steinernema carpocapsae L596_g9152 I 0.837
L892_g4417 Steinernema scapterisci L892_g4417 I 0.837
SVUK_0000435801 Strongylus vulgaris SVUK_0000435801 I 0.723
NFIA Taeniopygia guttata ENSTGUG00000009745 I 0.837
nfixb Takifugu rubripes ENSTRUG00000013602 I 0.791
NFIX Takifugu rubripes ENSTRUG00000005030 I 0.814
nfic Takifugu rubripes ENSTRUG00000005745 I 0.767
ENSTNIG00000003955 Tetraodon nigroviridis ENSTNIG00000003955 I 0.814
nfixb Tetraodon nigroviridis ENSTNIG00000011170 I 0.791
ENSTNIG00000003187 Tetraodon nigroviridis ENSTNIG00000003187 I 0.791
TCNE_0001032701 Toxocara canis TCNE_0001032701 I 0.814
TC001775 Tribolium castaneum TC001775 I 0.930
TMUE_s0020006100 Trichuris muris TMUE_s0020006100 I 0.860
D918_01205 Trichuris suis D918_01205 I 0.860
TTRE_0000653901 Trichuris trichiura TTRE_0000653901 I 0.860
NFIA Tupaia belangeri ENSTBEG00000013441 I 0.814
NFIC Tursiops truncatus ENSTTRG00000009660 I 0.767
NFIA Tursiops truncatus ENSTTRG00000011222 I 0.837
NFIA Vicugna pacos ENSVPAG00000004054 I 0.837
AAI70116 Xenopus laevis AAI70116 I 0.791
AAB38017 Xenopus laevis AAB38017 I 0.791
nfix Xenopus tropicalis XB-GENE-992650 I 0.814
nfic Xenopus tropicalis XB-GENE-484367 I 0.791
nfia Xenopus tropicalis XB-GENE-1010393 I 0.837
ENSXMAG00000000348 Xiphophorus maculatus ENSXMAG00000000348 I 0.791
ENSXMAG00000007238 Xiphophorus maculatus ENSXMAG00000007238 I 0.814
ENSXMAG00000008538 Xiphophorus maculatus ENSXMAG00000008538 I 0.837
L798_07165 Zootermopsis nevadensis L798_07165 I 0.953