CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSTOG00000028580
(
Ictidomys tridecemlineatus
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03165 (MH1)
IPR003619
ENSSTOG00000028580
T324970_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Smad4
M05889_2.00
Mus musculus
KCYAGACR
YGTCTRGM
SMiLE-seq
Isakova et al.(2017)
Smad4
1.000
1.000
SMAD4
M09377_2.00
Homo sapiens
DRGTGNSAGACWN
NWGTCTSNCACYH
Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B
1.000
1.000
Smad4
M09382_2.00
Mus musculus
DGWGNBAGVCWN
NWGBCTVNCWCH
Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A
1.000
1.000
SMAD4
M09634_2.00
Homo sapiens
NNNYGTCTGS
SCAGACRNNN
Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422
1.000
1.000
SMAD4
M11275_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q4
1.000
1.000
SMAD4
M11276_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6_01
1.000
1.000
SMAD4
M11277_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6
1.000
1.000
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.961
0.961
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.961
0.961
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000016654
SMAD
33
134
AKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVV
Links
Other
SMAD
family TFs
Other
Ictidomys tridecemlineatus
TFs
217 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASIM_0001286201
Anisakis simplex
ASIM_0001286201
N
0.000
ASU_12315
Ascaris suum
ASU_12315
N
0.000
Bm4554
Brugia malayi
Bm4554
N
0.000
BTMF_0000886001
Brugia timori
BTMF_0000886001
N
0.000
nDi.2.2.2.g04767
Dirofilaria immitis
nDi.2.2.2.g04767
N
0.000
EEL_0000313301
Elaeophora elaphi
EEL_0000313301
N
0.000
GPUH_0000349001
Gongylonema pulchrum
GPUH_0000349001
N
0.000
nLs.2.1.2.g00174
Litomosoides sigmodontis
nLs.2.1.2.g00174
N
0.000
LOAG_15758
Loa loa
LOAG_15758
N
0.000
OFLC_0001184401
Onchocerca flexuosa
OFLC_0001184401
N
0.000
nOo.2.0.1.g12737
Onchocerca ochengi
nOo.2.0.1.g12737
N
0.000
WBGene00239063
Onchocerca volvulus
WBGene00239063
N
0.000
scaffold491-EXSNAP2012.2
Pristionchus exspectatus
scaffold491-EXSNAP2012.2
N
0.000
PPA00214
Pristionchus pacificus
PPA00214
N
0.000
L596_g18701
Steinernema carpocapsae
L596_g18701
N
0.000
L893_g349
Steinernema glaseri
L893_g349
N
0.000
L898_g6331
Steinernema monticolum
L898_g6331
N
0.000
L892_g2112
Steinernema scapterisci
L892_g2112
N
0.000
TCLT_0000041401
Thelazia callipaeda
TCLT_0000041401
N
0.000
TCNE_0001731101
Toxocara canis
TCNE_0001731101
N
0.000
WUBG_04546
Wuchereria bancrofti
WUBG_04546
N
0.000