YQE_09289 (Dendroctonus ponderosae)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 YQE_09289 T325245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR

YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.934 0.934
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN

NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.857 0.857
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN

NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.857 0.857
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV

BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.857 0.857
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV

BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.857 0.857
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR

YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.857 0.857
NFIC
M11278_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.857 0.857
NFIC
M11279_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.857 0.857
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.857 0.857
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN

NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.835 0.835
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.813 0.813
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN

NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.813 0.813
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.813 0.813
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.813 0.813
NFIA
M11282_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.813 0.813
Nfia
M11291_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.813 0.813
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA

TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.791 0.791
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN

NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.791 0.791
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN

NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.791 0.791
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR

YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.791 0.791
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN

NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.791 0.791
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN

NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.791 0.791
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.769 0.769
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.769 0.769
Nfib
M09381_2.00
Mus musculus
BVWGCCARV

BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.769 0.769
NFIB
M11280_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.769 0.769
NFIB
M11281_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.769 0.769
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN

NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN74318 SMAD 63 167

Links

Other SMAD family TFs
Other Dendroctonus ponderosae TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000004660 Ailuropoda melanoleuca ENSAMEG00000004660 N 0.000
ENSAMEG00000004942 Ailuropoda melanoleuca ENSAMEG00000004942 I 0.000
ACUA026833 Anopheles culicifacies ACUA026833 I 0.000
AMAM000848 Anopheles maculatus AMAM000848 I 0.000
ASTEI06918 Anopheles stephensi ASTEI06918 N 0.000
ALUE_0001497801 Ascaris lumbricoides ALUE_0001497801 I 0.000
ALUE_0000848601 Ascaris lumbricoides ALUE_0000848601 I 0.000
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.000
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.000
ENSBTAP00000009672-D1 Bos grunniens ENSBTAP00000009672-D1 I 0.000
DLX4 Bos taurus ENSBTAG00000007353 I 0.000
DLX3 Bos taurus ENSBTAG00000017409 I 0.000
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.000
Cmyd_10001740 Chelonia mydas Cmyd_10001740 I 0.000
Cmyd_10012400 Chelonia mydas Cmyd_10012400 I 0.000
CLEC007171 Cimex lectularius CLEC007171 I 0.000
CGI_10016653 Crassostrea gigas CGI_10016653 I 0.000
Dbx1 Dipodomys ordii ENSDORG00000009286 N 0.000
GF12207 Drosophila ananassae FBgn0089246 I 0.000
EVEC_0000357701 Enterobius vermicularis EVEC_0000357701 I 0.000
DBX1 Gorilla gorilla ENSGGOG00000014848 N 0.000
HPLM_0001894101 Haemonchus placei HPLM_0001894101 I 0.000
TTAC_0000701101 Hydatigera taeniaeformis TTAC_0000701101 N 0.000
TTAC_0001021101 Hydatigera taeniaeformis TTAC_0001021101 N 0.000
HDID_0000333701 Hymenolepis diminuta HDID_0000333701 N 0.000
ENSLACG00000001487 Latimeria chalumnae ENSLACG00000001487 I 0.000
nLs.2.1.2.g05836 Litomosoides sigmodontis nLs.2.1.2.g05836 I 0.000
MCOS_0000655901 Mesocestoides corti MCOS_0000655901 N 0.000
DBX1 Microcebus murinus ENSMICG00000017111 N 0.000
DLX4 Myotis lucifugus ENSMLUG00000007268 I 0.000
NECAME_16530 Necator americanus NECAME_16530 I 0.000
ENSNLEG00000017811 Nomascus leucogenys ENSNLEG00000017811 N 0.000
DBX1 Ochotona princeps ENSOPRG00000012954 N 0.000
Ogr00185 Ophisaurus gracilis Ogr00185 N 0.000
T265_02852 Opisthorchis viverrini T265_02852 I 0.000
T265_14002 Opisthorchis viverrini T265_14002 I 0.000
ENSOARG00000005572 Ovis aries ENSOARG00000005572 I 0.000
DBX1 Pan troglodytes ENSPTRG00000003437 N 0.000
ENSPPYG00000003422 Pongo abelii ENSPPYG00000003422 N 0.000
DBX1 Procavia capensis ENSPCAG00000004905 N 0.000
SROB_0001564301 Schistosoma rodhaini SROB_0001564301 I 0.000
meox1 Takifugu rubripes ENSTRUG00000005193 I 0.000
ENSTSYG00000000516 Tarsius syrichta ENSTSYG00000000516 I 0.000
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.000
TELCIR_07728 Teladorsagia circumcincta TELCIR_07728 I 0.000
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.000
DBX1 Tursiops truncatus ENSTTRG00000000318 N 0.000
L798_06393 Zootermopsis nevadensis L798_06393 I 0.000