Gfo_R000026 (Geospiza fortis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Gfo_R000026 T325306_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad3
M00192_2.00 		Mus musculus
NNNNNMGMCN
NGKCKNNNNN		 PBM
Badis et al.(2009)
Smad3_3805 		1.000 1.000
SMAD3
M03482_2.00 		Homo sapiens
YGTCTAGACA
TGTCTAGACR		 SELEX
Jolma et al.(2013)
SMAD3_1 		1.000 1.000
SMAD3
M09380_2.00 		Homo sapiens
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B 		1.000 1.000
Smad3
M09384_2.00 		Mus musculus
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B 		1.000 1.000
Smad3
M09637_2.00 		Mus musculus
BYAGMCWN
NWGKCTRV		 Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673 		1.000 1.000
SMAD3
M11283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_01 		1.000 1.000
SMAD3
M11284_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_02 		1.000 1.000
SMAD3
M11285_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6 		1.000 1.000
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.720 0.720
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.720 0.720
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000026 SMAD 36 60

Links

Other SMAD family TFs
Other Geospiza fortis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
smad2.S Xenopus laevis XB-GENE-864923 I 1.000
SMAD3 Monodelphis domestica ENSMODG00000009609 I 1.000
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 1.000
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 1.000
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 1.000
SMAD3 Macaca mulatta ENSMMUG00000015455 I 1.000
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 1.000
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 1.000
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 1.000
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 1.000
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 1.000
AAB39329 Xenopus laevis AAB39329 I 1.000
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 1.000
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 1.000
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 1.000
Aan_R005610 Calypte anna Aan_R005610 I 1.000
Aan_R002236 Calypte anna Aan_R002236 I 1.000
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 1.000
smad3a Takifugu rubripes ENSTRUG00000016858 I 1.000
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 1.000
Tal_R000062 Tyto alba Tal_R000062 I 1.000
Gfo_R005908 Geospiza fortis Gfo_R005908 I 1.000
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I 1.000
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 1.000
ENSOARG00000018267 Ovis aries ENSOARG00000018267 I 1.000
SMAD3 Cavia porcellus ENSCPOG00000021314 I 1.000
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 1.000
smad3a Danio rerio ENSDARG00000036096 I 1.000
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 1.000
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 1.000
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.960
Ogr07750 Ophisaurus gracilis Ogr07750 I 0.960
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.960
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.960
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.960
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.960
SMAR008230 Strigamia maritima SMAR008230 I 0.920
L798_14024 Zootermopsis nevadensis L798_14024 I 0.920
smad3 Xenopus tropicalis XB-GENE-481992 I 0.920
D918_09504 Trichuris suis D918_09504 I 0.880
TTRE_0000192701 Trichuris trichiura TTRE_0000192701 I 0.880
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.880
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.880
CpipJ_CPIJ018354 Culex pipiens CpipJ_CPIJ018354 I 0.840
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.840
GB42212 Apis mellifera GB42212 N 0.840
Sakowv30032220m.g Saccoglossus kowalevskii Sakowv30032220m.g I 0.840
BGIBMGA009650 Bombyx mori BGIBMGA009650 N 0.800
Bm3140 Brugia malayi Bm3140 N 0.800
BTMF_0000153801 Brugia timori BTMF_0000153801 N 0.800
YQE_05290 Dendroctonus ponderosae YQE_05290 N 0.800
WBGene00238556 Onchocerca volvulus WBGene00238556 N 0.800
CLEC004107 Cimex lectularius CLEC004107 I 0.800
nOo.2.0.1.g09375 Onchocerca ochengi nOo.2.0.1.g09375 N 0.800
LOAG_07479 Loa loa LOAG_07479 N 0.800
CapteG167863 Capitella teleta CapteG167863 I 0.800
SINV22770 Solenopsis invicta SINV22770 I 0.800
ISCW001846 Ixodes scapularis ISCW001846 I 0.800
CGI_10014747 Crassostrea gigas CGI_10014747 I 0.760
ALUE_0000768501 Ascaris lumbricoides ALUE_0000768501 N 0.760
ASU_10357 Ascaris suum ASU_10357 N 0.760
TCNE_0001618601 Toxocara canis TCNE_0001618601 N 0.760
HelroG185435 Helobdella robusta HelroG185435 I 0.760
HMEL009327 Heliconius melpomene HMEL009327 N 0.760
LotgiG104873 Lottia gigantea LotgiG104873 I 0.760
EFV60166 Trichinella spiralis EFV60166 I 0.760
MCINX009972 Melitaea cinxia MCINX009972 I 0.760
WUBG_15118 Wuchereria bancrofti WUBG_15118 N 0.760
D917_04509 Trichinella nativa D917_04509 I 0.760
ENSPMAG00000009833 Petromyzon marinus ENSPMAG00000009833 I 0.760
SMAR012602 Strigamia maritima SMAR012602 I 0.720
ENSBTAP00000029021-D3 Bos grunniens ENSBTAP00000029021-D3 I 0.720
TsM_000781600 Taenia solium TsM_000781600 I 0.720
XP_002160208.1 Hydra magnipapillata XP_002160208.1 I 0.720
MCOS_0000603801 Mesocestoides corti MCOS_0000603801 I 0.720
nRc.2.0.1.g14309 Romanomermis culicivorax nRc.2.0.1.g14309 N 0.720
AFAF002080 Anopheles farauti AFAF002080 N 0.720
BGLB010651 Biomphalaria glabrata BGLB010651 I 0.720
DILT_0000355601 Diphyllobothrium latum DILT_0000355601 I 0.720
ECANG7_02712 Echinococcus canadensis ECANG7_02712 I 0.720
EmuJ_001018300 Echinococcus multilocularis EmuJ_001018300 I 0.720
SNAPOd2T00013556001 Oikopleura dioica SNAPOd2T00013556001 I 0.720
SMU15039699 Schmidtea mediterranea SMU15039699 I 0.720
estExt_fgenesh2_pg.C_20279 Branchiostoma floridae estExt_fgenesh2_pg.C_20279 I 0.720
Myotis_brandtii_SMAD9_10010468 Myotis brandtii Myotis_brandtii_SMAD9_10010468 I 0.720
TTAC_0000954401 Hydatigera taeniaeformis TTAC_0000954401 I 0.720
estExt_fgenesh2_pm.C_1880004 Branchiostoma floridae estExt_fgenesh2_pm.C_1880004 I 0.720
TASK_0000610701 Taenia asiatica TASK_0000610701 I 0.720
Sjc_0068210 Schistosoma japonicum Sjc_0068210 N 0.720
HHAL000023-PA Halyomorpha halys HHAL000023-PA I 0.720
ENSP00000382216 Macaca fascicularis ENSP00000382216 I 0.720
SMAD9 Tupaia belangeri ENSTBEG00000011491 I 0.720
SMAD9 Gorilla gorilla ENSGGOG00000001017 I 0.720
SMAD9 Homo sapiens ENSG00000120693 D 0.720
SMAD9 Felis catus ENSFCAG00000003813 I 0.720
SMAD9 Echinops telfairi ENSETEG00000020236 I 0.720
SMAD9 Loxodonta africana ENSLAFG00000002903 I 0.720
SMAD9 Microcebus murinus ENSMICG00000003343 I 0.720
ENSMPUG00000001838 Mustela putorius furo ENSMPUG00000001838 I 0.720
SMAD9 Macaca mulatta ENSMMUG00000009914 I 0.720
SMAD9 Myotis lucifugus ENSMLUG00000006399 I 0.720
SMAD9 Equus caballus ENSECAG00000012534 I 0.720
Smad9 Dipodomys ordii ENSDORG00000002526 I 0.720
SMAD9 Bos taurus ENSBTAG00000007589 I 0.720
ENSAMEG00000014442 Ailuropoda melanoleuca ENSAMEG00000014442 I 0.720
DAPPUDRAFT_300607 Daphnia pulex DAPPUDRAFT_300607 I 0.720
ACYPI010124 Acyrthosiphon pisum ACYPI010124 I 0.720
SMAD9 Canis familiaris ENSCAFG00000006162 I 0.720
ENSCSAG00000017872 Chlorocebus sabaeus ENSCSAG00000017872 I 0.720
SMAD9 Dasypus novemcinctus ENSDNOG00000048385 I 0.720
smad9 Danio rerio ENSDARG00000021938 I 0.720
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I 0.720
Smad9 Mus musculus ENSMUSG00000027796 D 0.720
ENSNLEG00000001639 Nomascus leucogenys ENSNLEG00000001639 I 0.720
SMAD9 Tursiops truncatus ENSTTRG00000007903 I 0.720
ENSTSYG00000005021 Tarsius syrichta ENSTSYG00000005021 I 0.720
ENSSTOG00000007103 Ictidomys tridecemlineatus ENSSTOG00000007103 I 0.720
SMAD9 Sus scrofa ENSSSCG00000009357 I 0.720
GA15332 Drosophila pseudoobscura FBgn0075352 N 0.720
GF20979 Drosophila ananassae FBgn0097984 N 0.720
GK24988 Drosophila willistoni FBgn0226947 N 0.720
GL20193 Drosophila persimilis FBgn0157788 N 0.720
GH24864 Drosophila grimshawi FBgn0132319 N 0.720
SMAD9 Sorex araneus ENSSARG00000011878 I 0.720
LOC103691556 Rattus norvegicus ENSRNOG00000058416 I 0.720
SMAD9 Ochotona princeps ENSOPRG00000004923 I 0.720
SMAD9 Otolemur garnettii ENSOGAG00000002742 I 0.720
SMAD9 Oryctolagus cuniculus ENSOCUG00000007453 I 0.720
ENSOARG00000010293 Ovis aries ENSOARG00000010293 I 0.720
ENSPANG00000014460 Papio anubis ENSPANG00000014460 I 0.720
SMAD9 Procavia capensis ENSPCAG00000002604 I 0.720
Smad9 Rattus norvegicus ENSRNOG00000000091 D 0.720
SMAD9 Pteropus vampyrus ENSPVAG00000013871 I 0.720
SMAD9 Pan troglodytes ENSPTRG00000005788 I 0.720
HelroG186716 Helobdella robusta HelroG186716 I 0.720