Gfo_R001933 (Geospiza fortis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Gfo_R001933 T325308_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.989 0.989
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.989 0.989
Nfib
M09381_2.00
Mus musculus
BVWGCCARV

BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.989 0.989
NFIB
M11280_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.989 0.989
NFIB
M11281_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.989 0.989
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN

NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.989 0.989
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.923 0.923
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN

NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.923 0.923
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.923 0.923
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.923 0.923
NFIA
M11282_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.923 0.923
Nfia
M11291_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.923 0.923
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA

TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.912 0.912
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN

NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.912 0.912
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN

NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.912 0.912
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR

YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.912 0.912
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN

NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.912 0.912
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN

NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.912 0.912
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN

NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.813 0.813
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN

NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.802 0.802
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN

NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.802 0.802
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV

BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.802 0.802
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV

BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.802 0.802
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR

YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.802 0.802
NFIC
M11278_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.802 0.802
NFIC
M11279_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.802 0.802
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.802 0.802
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR

YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R001933 SMAD 69 173

Links

Other SMAD family TFs
Other Geospiza fortis TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ROX1 Saccharomyces cerevisiae YPR065W D 0.000
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I 0.000
TDEL_0C04960 Torulaspora delbrueckii TDEL_0C04960 I 0.000
TBLA_0J01680 Tetrapisispora blattae TBLA_0J01680 I 0.000
SU7_3656 Saccharomyces arboricola SU7_3656 I 0.000
SPAPADRAFT_59824 Spathaspora passalidarum SPAPADRAFT_59824 I 0.000
SOCG_02523 Schizosaccharomyces octosporus SOCG_02523 I 0.000
SMAC_07212 Sordaria macrospora SMAC_07212 I 0.000
SCHCODRAFT_114988 Schizophyllum commune SCHCODRAFT_114988 I 0.000
SAPIO_CDS2868 Scedosporium apiospermum SAPIO_CDS2868 I 0.000
PVAR5_3110 Byssochlamys spectabilis PVAR5_3110 I 0.000
TDEL_0H02760 Torulaspora delbrueckii TDEL_0H02760 I 0.000
TESG_05246 Trichophyton tonsurans TESG_05246 I 0.000
Z519_03381 Cladophialophora bantiana Z519_03381 I 0.000
Z518_08063 Rhinocladiella mackenziei Z518_08063 I 0.000
Z517_08752 Fonsecaea pedrosoi Z517_08752 I 0.000
X797_008883 Metarhizium robertsii X797_008883 I 0.000
V499_06181 Pseudogymnoascus pannorum V499_06181 I 0.000
UREG_05111 Uncinocarpus reesii UREG_05111 I 0.000
U727_00431010161 Penicillium solitum U727_00431010161 I 0.000
TSTA_077960 Talaromyces stipitatus TSTA_077960 I 0.000
TPHA_0C01510 Tetrapisispora phaffii TPHA_0C01510 I 0.000
PV11_08420 Exophiala sideris PV11_08420 I 0.000
PV10_01892 Exophiala mesophila PV10_01892 I 0.000
PCH_Pc22g06930 Penicillium rubens PCH_Pc22g06930 I 0.000
PAS_chr2-1_0017 Komagataella pastoris PAS_chr2-1_0017 I 0.000
PABG_05778 Paracoccidioides brasiliensis PABG_05778 I 0.000
PABG_03121 Paracoccidioides brasiliensis PABG_03121 I 0.000
PAAG_02636 Paracoccidioides sp lutzii PAAG_02636 I 0.000
OIDMADRAFT_143853 Oidiodendron maius OIDMADRAFT_143853 I 0.000
OCS_06292 Ophiocordyceps sinensis OCS_06292 I 0.000
NV14822 Nasonia vitripennis NV14822 I 0.000
NEUTE1DRAFT_123419 Neurospora tetrasperma NEUTE1DRAFT_123419 I 0.000
PDE_06698 Penicillium oxalicum PDE_06698 I 0.000
PGUG_05440 Meyerozyma guilliermondii PGUG_05440 I 0.000
PHLGIDRAFT_46949 Phlebiopsis gigantea PHLGIDRAFT_46949 I 0.000
PV08_05977 Exophiala spinifera PV08_05977 I 0.000
PV07_10630 Cladophialophora immunda PV07_10630 I 0.000
PV06_03562 Exophiala oligosperma PV06_03562 I 0.000
PV05_11046 Exophiala xenobiotica PV05_11046 I 0.000
PV04_01817 Capronia semiimmersa PV04_01817 I 0.000
PPA11046 Pristionchus pacificus PPA11046 I 0.000
PMAA_040750 Talaromyces marneffei PMAA_040750 I 0.000
PITC_068990 Penicillium italicum PITC_068990 I 0.000
PICST_67218 Scheffersomyces stipitis PICST_67218 I 0.000
NEMVEDRAFT_v1g19525 Nematostella vectensis NEMVEDRAFT_v1g19525 I 0.000
TTAC_0000238201 Hydatigera taeniaeformis TTAC_0000238201 I 0.000
XP_002168586.1 Hydra magnipapillata XP_002168586.1 I 0.000
XP_002154864.1 Hydra magnipapillata XP_002154864.1 I 0.000
SAKL0F03872g Lachancea kluyveri SAKL0F03872g I 0.000
SAKL0B07656g Lachancea kluyveri SAKL0B07656g I 0.000
PMAA_040750 Penicillium marneffei PMAA_040750 I 0.000
Pc22g06930 Penicillium chrysogenum Pc22g06930 I 0.000
Kwal_21061 Kluyveromyces waltii Kwal_21061 I 0.000
KLTH0F13926g Kluyveromyces thermotolerans KLTH0F13926g I 0.000
fgenesh1_pm.00609_#_235 Aspergillus carbonarius fgenesh1_pm.00609_#_235 I 0.000
XP_002490896.1 Pichia pastoris XP_002490896.1 I 0.000
ECANG7_10853 Echinococcus canadensis ECANG7_10853 I 0.000
HDID_0000236901 Hymenolepis diminuta HDID_0000236901 I 0.000
TsM_000188900 Taenia solium TsM_000188900 I 0.000
TASK_0001001001 Taenia asiatica TASK_0001001001 I 0.000
SVE_0008400 Strongyloides venezuelensis SVE_0008400 I 0.000
SSTP_0001261500 Strongyloides stercoralis SSTP_0001261500 I 0.000
SSLN_0001637801 Schistocephalus solidus SSLN_0001637801 I 0.000
SPER_0001384501 Spirometra erinaceieuropaei SPER_0001384501 I 0.000
SPAL_0001526200 Strongyloides papillosus SPAL_0001526200 I 0.000
HNAJ_0001105001 Hymenolepis nana HNAJ_0001105001 I 0.000
HmN_000874900 Hymenolepis microstoma HmN_000874900 I 0.000
estExt_fgenesh1_pg.C_20723 Cryphonectria parasitica estExt_fgenesh1_pg.C_20723 I 0.000
23192_YPR065W Saccharomyces paradoxus 23192_YPR065W I 0.000
TVAG_344020 Trichomonas vaginalis TVAG_344020 I 0.000
TVAG_280760 Trichomonas vaginalis TVAG_280760 I 0.000
TVAG_201900 Trichomonas vaginalis TVAG_201900 I 0.000
TVAG_180150 Trichomonas vaginalis TVAG_180150 I 0.000
TVAG_142450 Trichomonas vaginalis TVAG_142450 I 0.000
TVAG_010230 Trichomonas vaginalis TVAG_010230 I 0.000
ZYRO0D15312g Zygosaccharomyces rouxii ZYRO0D15312g I 0.000
ZBAI_06138 Zygosaccharomyces bailii ZBAI_06138 I 0.000
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I 0.000
Cflo_05874--XP_001121937.1_APIME Camponotus floridanus Cflo_05874--XP_001121937.1_APIME I 0.000
Myotis_brandtii_SRY_10001815 Myotis brandtii Myotis_brandtii_SRY_10001815 I 0.000
estExt_fgenesh1_pg.C_chr_3.10092 Pichia stipitis estExt_fgenesh1_pg.C_chr_3.10092 I 0.000
22516_YPR065W Saccharomyces mikatae 22516_YPR065W I 0.000
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I 0.000
SMU15015648 Schmidtea mediterranea SMU15015648 I 0.000
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.000
Scas_Contig667.28 Saccharomyces castellii Scas_Contig667.28 I 0.000
Scas_Contig614.4 Saccharomyces castellii Scas_Contig614.4 I 0.000
NCU03481 Neurospora crassa NCU03481 I 0.000
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.000
fgeneshN1_pm.sca_3_chr4_2_0000013 Nectria haematococca fgeneshN1_pm.sca_3_chr4_2_0000013 I 0.000
ZBAI_00827 Zygosaccharomyces bailii ZBAI_00827 I 0.000
NechaG106035 Fusarium solani NechaG106035 I 0.000
GI22721 Drosophila mojavensis FBgn0145448 I 0.000
CD36_27640 Candida dubliniensis CD36_27640 I 0.000
CBG16279 Caenorhabditis briggsae CBG16279 I 0.000
CBG07189 Caenorhabditis briggsae CBG07189 I 0.000
CBG00068 Caenorhabditis briggsae CBG00068 I 0.000
CapteG39110 Capitella teleta CapteG39110 I 0.000
CapteG223458 Capitella teleta CapteG223458 I 0.000
CaO19.10341 Candida albicans CaO19.10341 I 0.000
CAGL0D05434g Candida glabrata CAGL0D05434g I 0.000
NFIA_105270 Neosartorya fischeri CADNFIAG00010303 I 0.000
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.000
CHGG_08188 Chaetomium globosum CHGG_08188 I 0.000
CMQ_1586 Grosmannia clavigera CMQ_1586 I 0.000
EURHEDRAFT_373724 Aspergillus ruber EURHEDRAFT_373724 I 0.000
SRY Bos taurus ENSBTAG00000047779 I 0.000
Ecym_3473 Eremothecium cymbalariae Ecym_3473 I 0.000
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I 0.000
DEHA2E09460g Debaryomyces hansenii DEHA2E09460g I 0.000
CTRG_00834 Candida tropicalis CTRG_00834 I 0.000
CPUR_06949 Claviceps purpurea CPUR_06949 I 0.000
CPC735_049570 Coccidioides posadasii CPC735_049570 I 0.000
CORT_0A01160 Candida orthopsilosis CORT_0A01160 I 0.000
ATEG_03987 Aspergillus terreus CADATEAG00009198 I 0.000
ANIA_01962 Aspergillus nidulans CADANIAG00008622 I 0.000
A1O5_04108 Cladophialophora psammophila A1O5_04108 I 0.000
A1O3_06089 Capronia epimyces A1O3_06089 I 0.000
A1O3_02036 Capronia epimyces A1O3_02036 I 0.000
A1O1_07971 Capronia coronata A1O1_07971 I 0.000
A1O1_00170 Capronia coronata A1O1_00170 I 0.000
SPPG_07085 Spizellomyces punctatus SPPG_07085 I 0.000
PGUG_05440 Candida guilliermondii PGUG_05440 I 0.000
MCYG_06419 Microsporum canis MCYG_06419 I 0.000
CPAG_04451 Candida parapsilosis CPAG_04451 I 0.000
A1O7_00275 Cladophialophora yegresii A1O7_00275 I 0.000
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I 0.000
AACERI_AaceriADL331C Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL331C I 0.000
CADANGAG00004297 Aspergillus niger CADANGAG00004297 I 0.000
AFUA_4G10820 Aspergillus fumigatus CADAFUAG00008327 I 0.000
CADAFLAG00002060 Aspergillus flavus CADAFLAG00002060 I 0.000
ACLA_049990 Aspergillus clavatus CADACLAG00004890 I 0.000
BN7_1833 Wickerhamomyces ciferrii BN7_1833 I 0.000
BDDG_02246 Blastomyces dermatitidis BDDG_02246 I 0.000
BATDEDRAFT_7482 Batrachochytrium dendrobatidis BATDEDRAFT_7482 I 0.000
AGOS_ADL331C Ashbya gossypii AGOS_ADL331C I 0.000
AGOS_AAR026W Ashbya gossypii AGOS_AAR026W I 0.000
CIMG_12783 Coccidioides immitis CIMG_12783 I 0.000
NDAI_0E03570 Naumovozyma dairenensis NDAI_0E03570 I 0.000
MAJ_07256 Metarhizium majus MAJ_07256 I 0.000
MAC_07229 Metarhizium acridum MAC_07229 I 0.000
LotgiG89909 Lottia gigantea LotgiG89909 I 0.000
LEMA_P114390.1 Leptosphaeria maculans LEMA_P114390.1 I 0.000
LELG_00108 Lodderomyces elongisporus LELG_00108 I 0.000
KUCA_T00002521001 Kuraishia capsulata KUCA_T00002521001 I 0.000
Kpol_401p4 Vanderwaltozyma polyspora Kpol_401p4 I 0.000
Kpol_1062p60 Vanderwaltozyma polyspora Kpol_1062p60 I 0.000
KLTH0F13926g Lachancea thermotolerans KLTH0F13926g I 0.000
MANI_017634 Metarhizium anisopliae MANI_017634 I 0.000
MBM_00651 Marssonina brunnea MBM_00651 I 0.000
NCAS_0E02010 Naumovozyma castellii NCAS_0E02010 I 0.000
NCAS_0A11120 Naumovozyma castellii NCAS_0A11120 I 0.000
MGYG_06874 Microsporum gypseum MGYG_06874 I 0.000
MGU_01572 Metarhizium guizhouense MGU_01572 I 0.000
MGG_03959 Magnaporthe oryzae MGG_03959 I 0.000
MGG_02978 Magnaporthe oryzae MGG_02978 I 0.000
MCYG_06419 Arthroderma otae MCYG_06419 I 0.000
MBR_05099 Metarhizium brunneum MBR_05099 I 0.000
KNAG_0H00720 Kazachstania naganishii KNAG_0H00720 I 0.000
KAFR_0H00950 Kazachstania africana KAFR_0H00950 I 0.000
KAFR_0G02830 Kazachstania africana KAFR_0G02830 I 0.000
JL09_g4172 Pichia kudriavzevii JL09_g4172 I 0.000
GNLVRS01_PISO0K11912g Millerozyma farinosa GNLVRS01_PISO0K11912g I 0.000
GMDG_03362 Pseudogymnoascus destructans GMDG_03362 I 0.000
GLOINDRAFT_61497 Rhizophagus irregularis GLOINDRAFT_61497 I 0.000
GLOINDRAFT_49297 Rhizophagus irregularis GLOINDRAFT_49297 I 0.000
GSTUM_00008644001 Tuber melanosporum GSTUM_00008644001 I 0.000
GLOINDRAFT_44333 Rhizophagus irregularis GLOINDRAFT_44333 I 0.000
GB51010 Apis mellifera GB51010 I 0.000
G647_00298 Cladophialophora carrionii G647_00298 I 0.000
GNLVRS01_PISO0L11913g Millerozyma farinosa GNLVRS01_PISO0L11913g I 0.000
G210_0578 Candida maltosa G210_0578 I 0.000
HPODL_00225 Ogataea parapolymorpha HPODL_00225 I 0.000
HMPREF1120_05727 Exophiala dermatitidis HMPREF1120_05727 I 0.000
HCBG_03514 Histoplasma capsulatum HCBG_03514 I 0.000
HCBG_03464 Histoplasma capsulatum HCBG_03464 I 0.000
H101_01550 Trichophyton interdigitale H101_01550 I 0.000
CC1G_05834 Coprinopsis cinerea CC1G_05834 N 0.000
HYDPIDRAFT_154960 Hydnomerulius pinastri HYDPIDRAFT_154960 N 0.000
PGTG_17717 Puccinia graminis PGTG_17717 N 0.000
Moror_11417 Moniliophthora roreri Moror_11417 N 0.000
GLOINDRAFT_26890 Rhizophagus irregularis GLOINDRAFT_26890 N 0.000
GLOINDRAFT_29935 Rhizophagus irregularis GLOINDRAFT_29935 N 0.000
CC1G_07858 Coprinopsis cinerea CC1G_07858 N 0.000
MELLADRAFT_114973 Melampsora laricipopulina MELLADRAFT_114973 N 0.000
UCREL1_2891 Eutypa lata UCREL1_2891 N 0.000