CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30032220m.g
(
Saccoglossus kowalevskii
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
Sakowv30032220m.g
T325373_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Smad3
M00192_2.00
Mus musculus
NNNNNMGMCN
NGKCKNNNNN
PBM
Badis et al.(2009)
Smad3_3805
0.718
0.718
SMAD3
M03482_2.00
Homo sapiens
YGTCTAGACA
TGTCTAGACR
SELEX
Jolma et al.(2013)
SMAD3_1
0.718
0.718
SMAD3
M09380_2.00
Homo sapiens
NBCTSHCWSCWB
VWGSWGDSAGVN
Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B
0.718
0.718
Smad3
M09384_2.00
Mus musculus
NBCTSHCWSCWB
VWGSWGDSAGVN
Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B
0.718
0.718
Smad3
M09637_2.00
Mus musculus
BYAGMCWN
NWGKCTRV
Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673
0.718
0.718
SMAD3
M11283_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6_01
0.718
0.718
SMAD3
M11284_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6_02
0.718
0.718
SMAD3
M11285_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD3_Q6
0.718
0.718
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23931852_peptide
SMAD
28
66
SEKAVKSLVKRLKKTGSLDELEKSISNQDASTKCVTIPR
23931853_peptide
SMAD
28
66
SEKAVKSLVKRLKKTGSLDELEKSISNQDASTKCVTIPR
Links
Other
SMAD
family TFs
Other
Saccoglossus kowalevskii
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gfo_R000026
Geospiza fortis
Gfo_R000026
I
0.840
CapteG167863
Capitella teleta
CapteG167863
I
0.769
SMAR008230
Strigamia maritima
SMAR008230
I
0.744
smad3a
Danio rerio
ENSDARG00000036096
I
0.744
Tal_R011237
Tyto alba
Tal_R011237
I
0.737
ENSAPLG00000011496
Anas platyrhynchos
ENSAPLG00000011496
I
0.737
Aan_R005610
Calypte anna
Aan_R005610
I
0.718
Afo_R015053
Aptenodytes forsteri
Afo_R015053
I
0.718
smad3a
Takifugu rubripes
ENSTRUG00000016858
I
0.718
ENSPFOG00000006336
Poecilia formosa
ENSPFOG00000006336
I
0.718
ENSGALG00000007870
Gallus gallus
ENSGALG00000007870
I
0.718
smad3a
Tetraodon nigroviridis
ENSTNIG00000009546
I
0.718
smad3b
Takifugu rubripes
ENSTRUG00000014802
I
0.718
Tal_R000062
Tyto alba
Tal_R000062
I
0.714
ENSGMOG00000001314
Gadus morhua
ENSGMOG00000001314
I
0.711
Brh_R001114
Buceros rhinoceros
Brh_R001114
I
0.711
MCINX009972
Melitaea cinxia
MCINX009972
I
0.707