CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMEC001904
(
Anopheles melas
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
AMEC001904
T325510_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.810
0.810
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.750
0.750
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.750
0.750
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.750
0.750
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV
BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.750
0.750
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.750
0.750
NFIC
M11278_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.750
0.750
NFIC
M11279_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.750
0.750
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.750
0.750
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN
NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.738
0.738
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.702
0.702
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN
NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.702
0.702
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN
NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.702
0.702
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.702
0.702
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.702
0.702
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMEC001904-PA
SMAD
1
98
LLGKLRKDITHDSRENFVHCISKKKTSMCILSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKACFCTSPSLCINPYHIQVLI
Links
Other
SMAD
family TFs
Other
Anopheles melas
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy