GPUH_0001193601 (Gongylonema pulchrum)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 GPUH_0001193601 T325686_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.771 0.771
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.757 0.757
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.757 0.757
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.757 0.757
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.757 0.757
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.757 0.757
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.757 0.757
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.757 0.757
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.757 0.757
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.743 0.743
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.729 0.729
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.729 0.729
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.729 0.729
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.729 0.729
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.729 0.729
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.729 0.729
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.700 0.700
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.700 0.700
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.700 0.700
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.700 0.700
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.700 0.700
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0001193601-mRNA-1 SMAD 89 165

Links

Other SMAD family TFs
Other Gongylonema pulchrum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCNE_0001032701 Toxocara canis TCNE_0001032701 I 0.843
ASU_05356 Ascaris suum ASU_05356 I 0.843
HMEL003745 Heliconius melpomene HMEL003745 I 0.829
LDEC011938 Leptinotarsa decemlineata LDEC011938 I 0.829
YQE_09289 Dendroctonus ponderosae YQE_09289 I 0.829
TELCIR_04049 Teladorsagia circumcincta TELCIR_04049 I 0.829
TC001775 Tribolium castaneum TC001775 I 0.829
BGIBMGA013352 Bombyx mori BGIBMGA013352 I 0.829
LotgiG215606 Lottia gigantea LotgiG215606 I 0.800
L798_07165 Zootermopsis nevadensis L798_07165 I 0.800
NV15784 Nasonia vitripennis NV15784 I 0.800
SINV21439 Solenopsis invicta SINV21439 I 0.800
Cflo_01240--XP_393740.3_APIME Camponotus floridanus Cflo_01240--XP_393740.3_APIME I 0.800
Hsal_10682--XP_393740.3_APIME Harpegnathos saltator Hsal_10682--XP_393740.3_APIME I 0.800
L892_g4417 Steinernema scapterisci L892_g4417 I 0.800
GB44961 Apis mellifera GB44961 I 0.800
ACEP19823 Atta cephalotes ACEP19823 I 0.800
HHAL002936-PA Halyomorpha halys HHAL002936-PA I 0.800
DAPPUDRAFT_52430 Daphnia pulex DAPPUDRAFT_52430 I 0.800
ACYPI010036 Acyrthosiphon pisum ACYPI010036 I 0.800
ISCW004440 Ixodes scapularis ISCW004440 I 0.786
Nfic Rattus norvegicus ENSRNOG00000004505 I 0.771
D918_01205 Trichuris suis D918_01205 I 0.771
Nfic Mus musculus ENSMUSG00000055053 D 0.771
L596_g9152 Steinernema carpocapsae L596_g9152 I 0.771
LLOJ009491 Lutzomyia longipalpis LLOJ009491 I 0.771
MESCA001033 Megaselia scalaris MESCA001033 I 0.771
TMUE_s0020006100 Trichuris muris TMUE_s0020006100 I 0.771
TTRE_0000653901 Trichuris trichiura TTRE_0000653901 I 0.771
LCUP004691 Lucilia cuprina LCUP004691 I 0.771
MDOA004700 Musca domestica MDOA004700 I 0.771
gw.438.21.1 Branchiostoma floridae gw.438.21.1 I 0.757
nfic Xenopus tropicalis XB-GENE-484367 I 0.757
fgenesh2_pg.scaffold_342000046 Branchiostoma floridae fgenesh2_pg.scaffold_342000046 I 0.757
GH23980 Drosophila grimshawi FBgn0131437 I 0.743
GG16454 Drosophila erecta FBgn0108685 I 0.743
GL18152 Drosophila persimilis FBgn0155755 I 0.743
MhA1_Contig410.frz3.gene15 Meloidogyne hapla MhA1_Contig410.frz3.gene15 I 0.743
NfI Drosophila melanogaster FBgn0042696 D 0.743
DME_0000465201 Dracunculus medinensis DME_0000465201 I 0.743
AAC25159 Xenopus laevis AAC25159 I 0.743
GM26787 Drosophila sechellia FBgn0181640 I 0.743
GF21690 Drosophila ananassae FBgn0098690 I 0.743
GI14107 Drosophila mojavensis FBgn0136861 I 0.743
GK13608 Drosophila willistoni FBgn0215616 I 0.743
AAB38017 Xenopus laevis AAB38017 I 0.743
GJ21334 Drosophila virilis FBgn0208464 I 0.743
GE14520 Drosophila yakuba FBgn0232122 I 0.743
GD24387 Drosophila simulans FBgn0195728 I 0.743
nfic Takifugu rubripes ENSTRUG00000005745 I 0.729
nfia Xenopus tropicalis XB-GENE-1010393 I 0.729
Aan_R011678 Calypte anna Aan_R011678 I 0.729
Alligator_sinensis_CCG015706.1 Alligator sinensis Alligator_sinensis_CCG015706.1 I 0.729
ENSSHAG00000009432 Sarcophilus harrisii ENSSHAG00000009432 I 0.729
NFIA Taeniopygia guttata ENSTGUG00000009745 I 0.729
ENSP00000383958 Macaca fascicularis ENSP00000383958 I 0.729
Myotis_brandtii_Nfia_10021409 Myotis brandtii Myotis_brandtii_Nfia_10021409 I 0.729
yakG029648 Bos grunniens yakG029648 I 0.729
Aan_R000637 Calypte anna Aan_R000637 I 0.729
Pvit_08116 Pogona vitticeps Pvit_08116 I 0.729
AAI70116 Xenopus laevis AAI70116 I 0.729
NFIA Vicugna pacos ENSVPAG00000004054 I 0.729
BXY_1713100 Bursaphelenchus xylophilus BXY_1713100 I 0.729
NFIA Tursiops truncatus ENSTTRG00000011222 I 0.729
ENSPSIG00000013911 Pelodiscus sinensis ENSPSIG00000013911 I 0.729
ENSFALG00000012430 Ficedula albicollis ENSFALG00000012430 I 0.729
NFIA Felis catus ENSFCAG00000005997 I 0.729
NFIA Echinops telfairi ENSETEG00000017068 I 0.729
NFIA Erinaceus europaeus ENSEEUG00000015082 I 0.729
Nfia Dipodomys ordii ENSDORG00000005150 I 0.729
NFIA Homo sapiens ENSG00000162599 D 0.729
nfia Gasterosteus aculeatus ENSGACG00000003153 I 0.729
ENSLAFG00000025943 Loxodonta africana ENSLAFG00000025943 I 0.729
ENSLACG00000004873 Latimeria chalumnae ENSLACG00000004873 I 0.729
NFIA Gorilla gorilla ENSGGOG00000027445 I 0.729
cNFI-A Gallus gallus ENSGALG00000010924 I 0.729
ENSDNOG00000002190 Dasypus novemcinctus ENSDNOG00000002190 I 0.729
nfia Danio rerio ENSDARG00000062420 I 0.729
ENSAMXG00000017908 Astyanax mexicanus ENSAMXG00000017908 I 0.729
ENSAMXG00000003579 Astyanax mexicanus ENSAMXG00000003579 I 0.729
ENSAMEG00000011711 Ailuropoda melanoleuca ENSAMEG00000011711 I 0.729
ENSACAG00000017087 Anolis carolinensis ENSACAG00000017087 I 0.729
ENSAPLG00000003407 Anas platyrhynchos ENSAPLG00000003407 I 0.729
NFIA Bos taurus ENSBTAG00000000074 I 0.729
ENSCSAG00000001333 Chlorocebus sabaeus ENSCSAG00000001333 I 0.729
NFIA Cavia porcellus ENSCPOG00000010091 I 0.729
NFIA Callithrix jacchus ENSCJAG00000016165 I 0.729
NFIA Canis familiaris ENSCAFG00000023117 I 0.729
NFIA Sorex araneus ENSSARG00000004476 I 0.729
ENSLOCG00000001284 Lepisosteus oculatus ENSLOCG00000001284 I 0.729
nfia Oryzias latipes ENSORLG00000003529 I 0.729
ENSLOCG00000009919 Lepisosteus oculatus ENSLOCG00000009919 I 0.729
ENSOARG00000008860 Ovis aries ENSOARG00000008860 I 0.729
ENSOANG00000012488 Ornithorhynchus anatinus ENSOANG00000012488 I 0.729
ENSPPYG00000001290 Pongo abelii ENSPPYG00000001290 I 0.729
ENSPSIG00000005327 Pelodiscus sinensis ENSPSIG00000005327 I 0.729
Nfia Rattus norvegicus ENSRNOG00000006966 D 0.729
NFIA Pteropus vampyrus ENSPVAG00000005805 I 0.729
NFIA Pan troglodytes ENSPTRG00000000802 I 0.729
Nfia Mus musculus ENSMUSG00000028565 D 0.729
NFIA Oryctolagus cuniculus ENSOCUG00000005893 I 0.729
ENSMICG00000005075 Microcebus murinus ENSMICG00000005075 I 0.729
ENSMGAG00000011639 Meleagris gallopavo ENSMGAG00000011639 I 0.729
ENSMEUG00000015063 Macropus eugenii ENSMEUG00000015063 I 0.729
ENSMLUG00000024011 Myotis lucifugus ENSMLUG00000024011 I 0.729
NFIA Macaca mulatta ENSMMUG00000013840 I 0.729
ENSMPUG00000007524 Mustela putorius furo ENSMPUG00000007524 I 0.729
NFIA Monodelphis domestica ENSMODG00000002475 I 0.729
L898_g32383 Steinernema monticolum L898_g32383 I 0.727
Ocbimv22006045m.g Octopus bimaculoides Ocbimv22006045m.g I 0.724
ENSGMOG00000019827 Gadus morhua ENSGMOG00000019827 I 0.714
ENSONIG00000004623 Oreochromis niloticus ENSONIG00000004623 I 0.714
ENSPFOG00000008414 Poecilia formosa ENSPFOG00000008414 I 0.714
Cmyd_10002384 Chelonia mydas Cmyd_10002384 I 0.714
ENSPFOG00000000946 Poecilia formosa ENSPFOG00000000946 I 0.714
ENSONIG00000007717 Oreochromis niloticus ENSONIG00000007717 I 0.714
GPLIN_000497200 Globodera pallida GPLIN_000497200 N 0.700
NFIA Tupaia belangeri ENSTBEG00000013441 I 0.700
ENSONIG00000006575 Oreochromis niloticus ENSONIG00000006575 I 0.700
ENSONIG00000018077 Oreochromis niloticus ENSONIG00000018077 I 0.700
ENSLOCG00000007997 Lepisosteus oculatus ENSLOCG00000007997 I 0.700
NFIX Homo sapiens ENSG00000008441 D 0.700
ENSAMXG00000015498 Astyanax mexicanus ENSAMXG00000015498 I 0.700
nfixb Danio rerio ENSDARG00000061836 I 0.700
NFIX Oryzias latipes ENSORLG00000003734 I 0.700
ENSPFOG00000000936 Poecilia formosa ENSPFOG00000000936 I 0.700
ENSXMAG00000000348 Xiphophorus maculatus ENSXMAG00000000348 I 0.700
ENSXMAG00000007238 Xiphophorus maculatus ENSXMAG00000007238 I 0.700
nfixb Takifugu rubripes ENSTRUG00000013602 I 0.700
nfixb Tetraodon nigroviridis ENSTNIG00000011170 I 0.700
ENSPFOG00000013453 Poecilia formosa ENSPFOG00000013453 I 0.700
nfix Xenopus tropicalis XB-GENE-992650 I 0.700