CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPUH_0001294301
(
Gongylonema pulchrum
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
GPUH_0001294301
T325687_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sma-4
M02484_2.00
Caenorhabditis elegans
NNCCAGACANN
NNTGTCTGGNN
PBM
Weirauch et al.(2014)
pTH8996
0.782
0.782
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPUH_0001294301-mRNA-1
SMAD
97
205
VRKAIESLVKKLKDKRNELENLITAVTSAGKQPTSCNYFHLRIHVIFQRSLDGRLQVAGRKGVPHVVYARIWRWPNVNKNELQKLPICAVAPDNQDVICINPYHYERIV
Links
Other
SMAD
family TFs
Other
Gongylonema pulchrum
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LOAG_05337
Loa loa
LOAG_05337
I
0.960
nAv.1.0.1.g08553
Acanthocheilonema viteae
nAv.1.0.1.g08553
I
0.951
WBGene00245700
Onchocerca volvulus
WBGene00245700
I
0.951
nOo.2.0.1.g06266
Onchocerca ochengi
nOo.2.0.1.g06266
I
0.951
OFLC_0000505301
Onchocerca flexuosa
OFLC_0000505301
I
0.951
WUBG_08631
Wuchereria bancrofti
WUBG_08631
I
0.951
Bm5359
Brugia malayi
Bm5359
I
0.941
BTMF_0000952301
Brugia timori
BTMF_0000952301
I
0.941
nDi.2.2.2.g06233
Dirofilaria immitis
nDi.2.2.2.g06233
I
0.941
TCLT_0000412001
Thelazia callipaeda
TCLT_0000412001
I
0.931
ALUE_0001111401
Ascaris lumbricoides
ALUE_0001111401
I
0.921
ASU_10605
Ascaris suum
ASU_10605
I
0.921
nLs.2.1.2.g01829
Litomosoides sigmodontis
nLs.2.1.2.g01829
I
0.911
EVEC_0000562301
Enterobius vermicularis
EVEC_0000562301
I
0.901
ASIM_0001219601
Anisakis simplex
ASIM_0001219601
I
0.901
Bm11291
Brugia malayi
Bm11291
I
0.886
L892_g4495
Steinernema scapterisci
L892_g4495
I
0.832
L596_g26024
Steinernema carpocapsae
L596_g26024
I
0.832
L889_g22387
Steinernema feltiae
L889_g22387
I
0.832
L893_g15056
Steinernema glaseri
L893_g15056
I
0.822
RSKR_0000114900
Rhabditophanes kr3021
RSKR_0000114900
I
0.822
SVE_0858500
Strongyloides venezuelensis
SVE_0858500
I
0.822
SPAL_0001099400
Strongyloides papillosus
SPAL_0001099400
I
0.822
Ppa-sma-4
Pristionchus pacificus
PPA17857
I
0.822
scaffold21-EXSNAP2012.60
Pristionchus exspectatus
scaffold21-EXSNAP2012.60
I
0.822
SSTP_0000769000
Strongyloides stercoralis
SSTP_0000769000
I
0.802
ANCDUO_13021
Ancylostoma duodenale
ANCDUO_13021
I
0.802
HPBE_0002536701
Heligmosomoides bakeri
HPBE_0002536701
I
0.792
CJA09693
Caenorhabditis japonica
CJA09693
I
0.792
NBR_0001377901
Nippostrongylus brasiliensis
NBR_0001377901
I
0.792
CGOC_0000897101
Cylicostephanus goldi
CGOC_0000897101
I
0.792
PTRK_0001020700
Parastrongyloides trichosuri
PTRK_0001020700
I
0.792
DICVIV_05422
Dictyocaulus viviparus
DICVIV_05422
I
0.792
CBG09090
Caenorhabditis briggsae
CBG09090
I
0.782
CRE04707
Caenorhabditis remanei
CRE04707
I
0.782
TELCIR_06960
Teladorsagia circumcincta
TELCIR_06960
I
0.782
HCOI01928500
Haemonchus contortus
HCOI01928500
I
0.782
sma-4
Caenorhabditis elegans
WBGene00004858
D
0.782
HCOI02014300
Haemonchus contortus
HCOI02014300
I
0.782
CBN31444
Caenorhabditis brenneri
CBN31444
I
0.772
GPLIN_000764400
Globodera pallida
GPLIN_000764400
I
0.752
BXY_1538500
Bursaphelenchus xylophilus
BXY_1538500
I
0.752
TELCIR_11814
Teladorsagia circumcincta
TELCIR_11814
I
0.736
Minc10272
Meloidogyne incognita
Minc10272
I
0.733
Minc06316
Meloidogyne incognita
Minc06316
I
0.733
maker-nMf.1.1.scaf05118-snap-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf05118-snap-gene-0.7
I
0.723
ANCCAN_26651
Ancylostoma caninum
ANCCAN_26651
I
0.707