CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L889_g6780
(
Steinernema feltiae
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
L889_g6780
T325755_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.706
0.706
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L889_g6780.t1
SMAD
68
171
TIKAIESLIKKLKDKRNELEVLLRVISKRGEGPEASECITIPRTLDGRLQVAGRKGFPHVVYARIWRWPDLHKNELKHVPHCTSAFDMKTDSVCINPFHYERIQ
L889_g6780.t2
SMAD
68
161
TIKAIESLIKKLKDKRNELEVLLRVISKRGEGPEASECITIPRTLDGRLQVAGRKGFPHVVYARIWRWPDLHKNELKHVPHCTSAFDMKTDSPS
L889_g6780.t2
SMAD
285
357
IPQSRSAVESRSESRSRCAPLESAVRATSQLNERRCRRRSSSTIAADDRRIAAKRIYFCRRHLRIVILRNASC
Links
Other
SMAD
family TFs
Other
Steinernema feltiae
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy