CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nOo.2.0.1.g00181
(
Onchocerca ochengi
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
nOo.2.0.1.g00181
T325847_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.775
0.775
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.775
0.775
Smad4
M05889_2.00
Mus musculus
KCYAGACR
YGTCTRGM
SMiLE-seq
Isakova et al.(2017)
Smad4
0.765
0.765
SMAD4
M09377_2.00
Homo sapiens
DRGTGNSAGACWN
NWGTCTSNCACYH
Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B
0.765
0.765
Smad4
M09382_2.00
Mus musculus
DGWGNBAGVCWN
NWGBCTVNCWCH
Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A
0.765
0.765
SMAD4
M09634_2.00
Homo sapiens
NNNYGTCTGS
SCAGACRNNN
Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422
0.765
0.765
SMAD4
M11275_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q4
0.765
0.765
SMAD4
M11276_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6_01
0.765
0.765
SMAD4
M11277_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6
0.765
0.765
sma-4
M02484_2.00
Caenorhabditis elegans
NNCCAGACANN
NNTGTCTGGNN
PBM
Weirauch et al.(2014)
pTH8996
0.716
0.716
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nOo.2.0.1.t00181-RA
SMAD
461
562
SRKAIESLIKKLKDKRDELDALITTVASHGKISPKCITIQRTLDGRLQVAGRKGFPHVVYARIWRWPDLHKNELKHLPICQCAFDLKCDLVCVNPYHYERVV
Links
Other
SMAD
family TFs
Other
Onchocerca ochengi
TFs
239 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy