TMUE_s0006012700 (Trichuris muris)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 TMUE_s0006012700 T325968_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Smad4
M05889_2.00
Mus musculus
KCYAGACR

YGTCTRGM
SMiLE-seq
Isakova et al.(2017)
Smad4
0.833 0.833
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT

ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.833 0.833
SMAD4
M09377_2.00
Homo sapiens
DRGTGNSAGACWN

NWGTCTSNCACYH
Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B
0.833 0.833
Smad4
M09382_2.00
Mus musculus
DGWGNBAGVCWN

NWGBCTVNCWCH
Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A
0.833 0.833
SMAD4
M09634_2.00
Homo sapiens
NNNYGTCTGS

SCAGACRNNN
Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422
0.833 0.833
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY

RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.833 0.833
SMAD4
M11275_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q4
0.833 0.833
SMAD4
M11276_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6_01
0.833 0.833
SMAD4
M11277_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6
0.833 0.833
sma-4
M02484_2.00
Caenorhabditis elegans
NNCCAGACANN

NNTGTCTGGNN
PBM
Weirauch et al.(2014)
pTH8996
0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0006012700 SMAD 99 200

Links

Other SMAD family TFs
Other Trichuris muris TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA020123 Oryza indica BGIOSGA020123 N 0.000
BRADI2G20760 Brachypodium distachyon BRADI2G20760 N 0.000
GRMZM2G313078 Zea mays GRMZM2G313078 N 0.000
LPERR05G17730 Leersia perrieri LPERR05G17730 N 0.000
MLOC_41071 Hordeum vulgare MLOC_41071 N 0.000
OB05G29380 Oryza brachyantha OB05G29380 N 0.000
OGLUM05G23020 Oryza glumaepatula OGLUM05G23020 N 0.000
OLONG_006513 Oryza longistaminata OLONG_006513 N 0.000
OMERI05G19700 Oryza meridionalis OMERI05G19700 N 0.000
OPUNC05G19420 Oryza punctata OPUNC05G19420 N 0.000
ORGLA05G0190100 Oryza glaberrima ORGLA05G0190100 N 0.000
ORUFI05G23090 Oryza rufipogon ORUFI05G23090 N 0.000
OS05G0500600 Oryza sativa OS05G0500600 N 0.000
Pavir.Ca01302 Panicum virgatum Pavir.Ca01302 N 0.000
Sb09g024690 Sorghum bicolor Sb09g024690 N 0.000
Si022117m.g Setaria italica Si022117m.g N 0.000
Traes_1AL_FB0C83DD9 Triticum aestivum Traes_1AL_FB0C83DD9 N 0.000