TRE_0001987301 (Trichobilharzia regenti)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 TRE_0001987301 T325972_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT

ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.794 0.794
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY

RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.794 0.794
Smad4
M05889_2.00
Mus musculus
KCYAGACR

YGTCTRGM
SMiLE-seq
Isakova et al.(2017)
Smad4
0.775 0.775
SMAD4
M09377_2.00
Homo sapiens
DRGTGNSAGACWN

NWGTCTSNCACYH
Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B
0.775 0.775
Smad4
M09382_2.00
Mus musculus
DGWGNBAGVCWN

NWGBCTVNCWCH
Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A
0.775 0.775
SMAD4
M09634_2.00
Homo sapiens
NNNYGTCTGS

SCAGACRNNN
Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422
0.775 0.775
SMAD4
M11275_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q4
0.775 0.775
SMAD4
M11276_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6_01
0.775 0.775
SMAD4
M11277_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6
0.775 0.775
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0001987301-mRNA-1 SMAD 36 139

Links

Other SMAD family TFs
Other Trichobilharzia regenti TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
csin105722 Clonorchis sinensis csin105722 N 0.000
D915_08968 Fasciola hepatica D915_08968 I 0.000
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.000
Smp_145970 Schistosoma mansoni Smp_145970 N 0.000