CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RO3G_10453
(
Rhizopus oryzae
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
RO3G_10453
T326109_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.447
0.338
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.447
0.338
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_10452
Sox
1
65
MNSFMIYRLEKQHEIVKECPGANHRDISKIVAKWWKEMPDEEKEPYRQKAERAKEEHQRLYPDYK
Links
Other
Sox
family TFs
Other
Rhizopus oryzae
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy