RO3G_12690 (Rhizopus oryzae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 RO3G_12690 T326113_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW

WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.509 0.333
ste11
M11343_2.00
Schizosaccharomyces pombe Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.509 0.333
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW

AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.447 0.319
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD

HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.447 0.319
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY

RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.442 0.290
Sox102F
M03981_2.00
Drosophila melanogaster
ATTGTTCGGTGKN

NMCACCGAACAAT
SELEX
Nitta et al.(2015)
Sox102F_1
0.421 0.333
Sox102F
M03982_2.00
Drosophila melanogaster
NAACAATDDCATTGTTN

NAACAATGHHATTGTTN
SELEX
Nitta et al.(2015)
Sox102F_2
0.421 0.333
Sox5
M00203_2.00
Mus musculus
ATTGTBNN

NNVACAAT
PBM
Badis et al.(2009)
Sox5_3459
0.419 0.348
Sox13
M00212_2.00
Mus musculus
RAACAATW

WATTGTTY
PBM
Badis et al.(2009)
Sox13_1718
0.419 0.348
SOX5
M05894_2.00
Homo sapiens
DVACAATRVN

NBYATTGTBH
SMiLE-seq
Isakova et al.(2017)
SOX5
0.419 0.348
Sox5
M02719_2.00
Mus musculus
NAACAAT

ATTGTTN
SELEX
Mathelier et al.(2014)
MA0087.1
0.419 0.348
SOX13
M08166_2.00
Homo sapiens
NNACAATGVNN

NNBCATTGTNN
ChIP-seq
Mathelier et al.(2014)
MA1120.1
0.419 0.348
SOX5
M09390_2.00
Homo sapiens
NAACAATN

NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C
0.419 0.348
Sox5
M09404_2.00
Mus musculus
NAACAATN

NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C
0.419 0.348
SOX5
M11309_2.00
Homo sapiens
NNAACAATNN

NNATTGTTNN
Transfac
Matys et al.(2006)
V$SOX5_01
0.419 0.348
SOX5
M11310_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX5_Q5
0.419 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RO3T_12689 Sox 16 84

Links

Other Sox family TFs
Other Rhizopus oryzae TFs

Invalid Input OrderBy

506 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action