CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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A1O7_09629
(
Cladophialophora yegresii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
A1O7_09629
T326223_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.491
0.420
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.491
0.420
Sox5
M00203_2.00
Mus musculus
ATTGTBNN
NNVACAAT
PBM
Badis et al.(2009)
Sox5_3459
0.460
0.333
Sox13
M00212_2.00
Mus musculus
RAACAATW
WATTGTTY
PBM
Badis et al.(2009)
Sox13_1718
0.460
0.333
SOX5
M05894_2.00
Homo sapiens
DVACAATRVN
NBYATTGTBH
SMiLE-seq
Isakova et al.(2017)
SOX5
0.460
0.333
Sox5
M02719_2.00
Mus musculus
NAACAAT
ATTGTTN
SELEX
Mathelier et al.(2014)
MA0087.1
0.460
0.333
SOX13
M08166_2.00
Homo sapiens
NNACAATGVNN
NNBCATTGTNN
ChIP-seq
Mathelier et al.(2014)
MA1120.1
0.460
0.333
SOX5
M09390_2.00
Homo sapiens
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C
0.460
0.333
Sox5
M09404_2.00
Mus musculus
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C
0.460
0.333
SOX5
M11309_2.00
Homo sapiens
NNAACAATNN
NNATTGTTNN
Transfac
Matys et al.(2006)
V$SOX5_01
0.460
0.333
SOX5
M11310_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX5_Q5
0.460
0.333
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.450
0.348
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.450
0.348
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.441
0.377
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.441
0.377
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.441
0.377
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.441
0.377
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.441
0.377
Sox6
M00828_2.00
Mus musculus
WTTGTNNNN
NNNNACAAW
PBM
Weirauch et al.(2013)
pTH3862
0.439
0.348
SOX6
M05892_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX6
0.439
0.348
Sox6
M08169_2.00
Mus musculus
BCWTTGTYYY
RRRACAAWGV
ChIP-seq
Mathelier et al.(2014)
MA0515.1
0.439
0.348
Sox6
M09640_2.00
Mus musculus
BHWTTGTBNN
NNVACAAWDV
Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627
0.439
0.348
SOX6
M11300_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX6_Q5
0.439
0.348
Sox14
M00829_2.00
Mus musculus
NAACAATD
HATTGTTN
PBM
Weirauch et al.(2013)
pTH2677
0.436
0.333
Sox14
M00206_2.00
Mus musculus
NNNABAAW
WTTVTNNN
PBM
Badis et al.(2009)
Sox14_2677
0.436
0.333
SOX14
M03513_2.00
Homo sapiens
ACAMTAMCATTG
CAATGKTAKTGT
SELEX
Jolma et al.(2013)
SOX14_1
0.436
0.333
SOX14
M03514_2.00
Homo sapiens
NTGAATANCATTCAN
NTGAATGNTATTCAN
SELEX
Jolma et al.(2013)
SOX14_2
0.436
0.333
SOX14
M03515_2.00
Homo sapiens
TCAATWVCATTGA
TCAATGBWATTGA
SELEX
Jolma et al.(2013)
SOX14_3
0.436
0.333
SOX14
M05783_2.00
Homo sapiens
NYATTGWNNN
NNNWCAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_HT-SELEX
0.436
0.333
SOX14
M05785_2.00
Homo sapiens
NCGAACAATK
MATTGTTCGN
SELEX
Yin et al.(2017)
SOX14_FL_HT-SELEX
0.436
0.333
SOX14
M05784_2.00
Homo sapiens
NYATTGTNNN
NNNACAATRN
SELEX
Yin et al.(2017)
SOX14_eDBD_Methyl-HT-SELEX
0.436
0.333
SOX14
M05786_2.00
Homo sapiens
NATTGTTYGB
VCRAACAATN
SELEX
Yin et al.(2017)
SOX14_FL_Methyl-HT-SELEX
0.436
0.333
egl-13
M00710_2.00
Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN
PBM
Narasimhan et al.(2015)
pTH9125
0.432
0.304
Sox102F
M03981_2.00
Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT
SELEX
Nitta et al.(2015)
Sox102F_1
0.432
0.304
Sox102F
M03982_2.00
Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN
SELEX
Nitta et al.(2015)
Sox102F_2
0.432
0.304
Sox8
M00197_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox8_1733
0.424
0.333
SOX8
M03483_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX8_1
0.424
0.333
SOX8
M03484_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_2
0.424
0.333
SOX8
M03485_2.00
Homo sapiens
RAACAATTKCAGTGTTN
NAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX8_3
0.424
0.333
SOX8
M03486_2.00
Homo sapiens
HATCAATTKCAGTGATN
NATCACTGMAATTGATD
SELEX
Jolma et al.(2013)
SOX8_4
0.424
0.333
SOX8
M03487_2.00
Homo sapiens
TGAATRTKCAGTCA
TGACTGMAYATTCA
SELEX
Jolma et al.(2013)
SOX8_5
0.424
0.333
SOX8
M03488_2.00
Homo sapiens
AACAATTDCAGTGTT
AACACTGHAATTGTT
SELEX
Jolma et al.(2013)
SOX8_6
0.424
0.333
SOX8
M03489_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_7
0.424
0.333
SOX8
M03490_2.00
Homo sapiens
MATCAATTGCAGTGATK
MATCACTGCAATTGATK
SELEX
Jolma et al.(2013)
SOX8_8
0.424
0.333
SOX8
M05749_2.00
Homo sapiens
NDAACAATRV
BYATTGTTHN
SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX
0.424
0.333
SOX8
M05751_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX
0.424
0.333
SOX8
M05750_2.00
Homo sapiens
BYATTGTTNN
NNAACAATRV
SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX
0.424
0.333
SOX8
M05752_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX
0.424
0.333
Sox17
M00199_2.00
Mus musculus
NNNNWSAAT
ATTSWNNNN
PBM
Badis et al.(2009)
Sox17_2837
0.419
0.348
Sox18
M00204_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox18_3506
0.419
0.348
SOX18
M03529_2.00
Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT
SELEX
Jolma et al.(2013)
SOX18_1
0.419
0.348
SOX18
M03530_2.00
Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT
SELEX
Jolma et al.(2013)
SOX18_2
0.419
0.348
SOX18
M03531_2.00
Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT
SELEX
Jolma et al.(2013)
SOX18_3
0.419
0.348
Sox17
M03533_2.00
Mus musculus
AACAATWDCATTGTT
AACAATGHWATTGTT
SELEX
Jolma et al.(2013)
Sox17_1
0.419
0.348
Sox17
M03534_2.00
Mus musculus
ATGAATWNCATTCAT
ATGAATGNWATTCAT
SELEX
Jolma et al.(2013)
Sox17_2
0.419
0.348
SOX18
M05791_2.00
Homo sapiens
VACRAYGV
BCRTYGTB
SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX
0.419
0.348
SOX17
M05896_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX17
0.419
0.348
Sox17
M02718_2.00
Mus musculus
SACAATRNN
NNYATTGTS
SELEX
Mathelier et al.(2014)
MA0078.1
0.419
0.348
Sox17
M08040_2.00
Mus musculus
RVACAAWRRVN
NBYYWTTGTBY
ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells
0.419
0.348
SOX17
M09396_2.00
Homo sapiens
BCCATTKTNBN
NVNAMAATGGV
Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C
0.419
0.348
SOX17
M11323_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_01
0.419
0.348
SOX17
M11324_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX17_Q2
0.419
0.348
SOX18
M11334_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5_01
0.419
0.348
SOX18
M11335_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX18_Q5
0.419
0.348
SOX18
M05792_2.00
Homo sapiens
BYATTGTN
NACAATRV
SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX
0.419
0.348
Sox7
M00209_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox7_3460
0.419
0.333
SOX7
M03516_2.00
Homo sapiens
AACAATRDNHAKTGTT
AACAMTDNHYATTGTT
SELEX
Jolma et al.(2013)
SOX7_1
0.419
0.333
SOX7
M03517_2.00
Homo sapiens
DAACAATKDYAKTGTTN
NAACAMTRHMATTGTTH
SELEX
Jolma et al.(2013)
SOX7_2
0.419
0.333
SOX7
M03518_2.00
Homo sapiens
NATGAATKDCAKTCATN
NATGAMTGHMATTCATN
SELEX
Jolma et al.(2013)
SOX7_3
0.419
0.333
SOX7
M05787_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX
0.419
0.333
SOX7
M11325_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX7_Q2
0.419
0.333
SOX7
M05788_2.00
Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT
SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX
0.419
0.333
Sox10
M00826_2.00
Mus musculus
NNNNWBAAT
ATTVWNNNN
PBM
Weirauch et al.(2013)
pTH1729
0.417
0.319
SOX10
M03491_2.00
Homo sapiens
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
SOX10_1
0.417
0.319
SOX10
M03492_2.00
Homo sapiens
AACAATRTKCAGTGTT
AACACTGMAYATTGTT
SELEX
Jolma et al.(2013)
SOX10_2
0.417
0.319
SOX10
M03493_2.00
Homo sapiens
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
SOX10_3
0.417
0.319
SOX10
M03494_2.00
Homo sapiens
ATGAATTKCAGTCAT
ATGACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX10_4
0.417
0.319
SOX10
M03495_2.00
Homo sapiens
TGAATGTKCAGTCA
TGACTGMACATTCA
SELEX
Jolma et al.(2013)
SOX10_5
0.417
0.319
SOX9
M03501_2.00
Homo sapiens
DDACAATRV
BYATTGTHH
SELEX
Jolma et al.(2013)
SOX9_1
0.417
0.319
SOX9
M03502_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX9_2
0.417
0.319
SOX9
M03503_2.00
Homo sapiens
ATCAATRTKCAGTGAT
ATCACTGMAYATTGAT
SELEX
Jolma et al.(2013)
SOX9_3
0.417
0.319
SOX9
M03504_2.00
Homo sapiens
ATGAATRTKCAGTCAT
ATGACTGMAYATTCAT
SELEX
Jolma et al.(2013)
SOX9_4
0.417
0.319
SOX9
M03505_2.00
Homo sapiens
RAACAATTKCAGTGTTH
DAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX9_5
0.417
0.319
SOX9
M03506_2.00
Homo sapiens
NATCAATKKYAGTGATN
NATCACTRMMATTGATN
SELEX
Jolma et al.(2013)
SOX9_6
0.417
0.319
SOX9
M03507_2.00
Homo sapiens
NATGAATTKCAGTCATN
NATGACTGMAATTCATN
SELEX
Jolma et al.(2013)
SOX9_7
0.417
0.319
Sox10
M03535_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox10_1
0.417
0.319
Sox10
M03536_2.00
Mus musculus
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
Sox10_2
0.417
0.319
Sox10
M03537_2.00
Mus musculus
ATGAATTDCAGTCAT
ATGACTGHAATTCAT
SELEX
Jolma et al.(2013)
Sox10_3
0.417
0.319
SOX10
M05759_2.00
Homo sapiens
AACAATRNNNYATTGTT
AACAATRNNNYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_HT-SELEX
0.417
0.319
SOX10
M05761_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_HT-SELEX
0.417
0.319
SOX9
M05767_2.00
Homo sapiens
HDAACAATRV
BYATTGTTHD
SELEX
Yin et al.(2017)
SOX9_eDBD_HT-SELEX
0.417
0.319
SOX10
M05891_2.00
Homo sapiens
BBCWWTGTTH
DAACAWWGVV
SMiLE-seq
Isakova et al.(2017)
SOX10
0.417
0.319
SOX9
M02716_2.00
Homo sapiens
DAACAATRG
CYATTGTTH
SELEX
Mathelier et al.(2014)
MA0077.1
0.417
0.319
SOX10
M08165_2.00
Homo sapiens
NNVACAAAGVN
NBCTTTGTBNN
ChIP-seq
Mathelier et al.(2014)
MA0442.2
0.417
0.319
SOX10
M09387_2.00
Homo sapiens
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_HUMAN.H11MO.0.B
0.417
0.319
SOX9
M09389_2.00
Homo sapiens
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_HUMAN.H11MO.0.B
0.417
0.319
Sox10
M09403_2.00
Mus musculus
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_MOUSE.H11MO.0.B
0.417
0.319
Sox9
M09399_2.00
Mus musculus
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_MOUSE.H11MO.0.A
0.417
0.319
SOX10
M11296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q3
0.417
0.319
SOX10
M11297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6_01
0.417
0.319
SOX10
M11298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6
0.417
0.319
SOX9
M11304_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_09
0.417
0.319
SOX9
M11305_2.00
Homo sapiens
NNNDAACAATRRNN
NNYYATTGTTHNNN
Transfac
Matys et al.(2006)
V$SOX9_B1
0.417
0.319
SOX9
M11306_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q4
0.417
0.319
SOX9
M11307_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q5
0.417
0.319
SOX10
M05760_2.00
Homo sapiens
AACAATRSNSYATTGTT
AACAATRSNSYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_Methyl-HT-SELEX
0.417
0.319
SOX10
M05762_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_Methyl-HT-SELEX
0.417
0.319
SOX9
M05768_2.00
Homo sapiens
NNNACAATRS
SYATTGTNNN
SELEX
Yin et al.(2017)
SOX9_eDBD_Methyl-HT-SELEX
0.417
0.319
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EXJ54291
Sox
151
219
VTRPPNAFILYRTYYHPILLQSRPDLANNDISVMLGKQWKSESEEVKNEWKAKAAQVKKQHALENPGYQ
Links
Other
Sox
family TFs
Other
Cladophialophora yegresii
TFs
1087 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy