CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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A1O9_08621
(
Exophiala aquamarina
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
A1O9_08621
T326231_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.462
0.362
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.462
0.362
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.460
0.449
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.460
0.449
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.452
0.435
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.452
0.435
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.452
0.435
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.452
0.435
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.452
0.435
SOX4
M01026_2.00
Homo sapiens
AACAAWGR
YCWTTGTT
PBM
Scharer et al.(2009)
Sox4
0.443
0.362
Sox4
M00213_2.00
Mus musculus
NNVACAAWD
HWTTGTBNN
PBM
Badis et al.(2009)
Sox4_2941
0.443
0.362
SOX4
M03496_2.00
Homo sapiens
NAACAATTKCAGTGTT
AACACTGMAATTGTTN
SELEX
Jolma et al.(2013)
SOX4_1
0.443
0.362
SOX4
M05765_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_HT-SELEX
0.443
0.362
SOX4
M09388_2.00
Homo sapiens
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_HUMAN.H11MO.0.B
0.443
0.362
Sox4
M09410_2.00
Mus musculus
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_MOUSE.H11MO.0.A
0.443
0.362
Sox4
M09641_2.00
Mus musculus
BCWTTGTYCN
NGRACAAWGV
Misc
Heinz et al.(2010)
proB-Sox4_GSE50066
0.443
0.362
SOX4
M11301_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q3
0.443
0.362
SOX4
M11302_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5_02
0.443
0.362
SOX4
M11303_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5
0.443
0.362
SOX4
M05766_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_Methyl-HT-SELEX
0.443
0.362
Sox11
M00210_2.00
Mus musculus
WTTGTBNNN
NNNVACAAW
PBM
Badis et al.(2009)
Sox11_2266
0.443
0.348
Sox11
M03541_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox11_1
0.443
0.348
SOX11
M11326_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX11_Q6
0.443
0.348
Sox12
M00205_2.00
Mus musculus
HWTTGTBNNN
NNNVACAAWD
PBM
Badis et al.(2009)
Sox12_3957
0.440
0.333
SOX12
M05789_2.00
Homo sapiens
NATTGTTCGGK
MCCGAACAATN
SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX
0.440
0.333
SOX12
M05790_2.00
Homo sapiens
YATTGTTCBKT
AMVGAACAATR
SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX
0.440
0.333
Sox30
M00201_2.00
Mus musculus
ATTRTBNNNN
NNNNVAYAAT
PBM
Badis et al.(2009)
Sox30_2781
0.420
0.406
SOX30
M05753_2.00
Homo sapiens
NRACAATN
NATTGTYN
SELEX
Yin et al.(2017)
SOX30_eDBD_HT-SELEX
0.420
0.406
SOX30
M05754_2.00
Homo sapiens
BATTGTYN
NRACAATV
SELEX
Yin et al.(2017)
SOX30_eDBD_Methyl-HT-SELEX
0.420
0.406
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEF54969
Sox
141
209
VPRPPNAFILYRQSNHPILKAEMPALTNNQISVILGKQWKAESEEVKDRFRVMAELLKTKHAAENPGYQ
Links
Other
Sox
family TFs
Other
Exophiala aquamarina
TFs
583 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy