HMGB5 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Al_scaffold_0007_498 T326422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.582 0.623
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0007_498 Sox 34 103

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.733
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.690
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.690
HMGB5 Arabidopsis thaliana AT4G35570 I 0.672
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.652
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.652
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.652
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.652
Bra037266 Brassica rapa Bra037266 I 0.649
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.649
HMGB4 Arabidopsis thaliana AT2G17560 I 0.640
Bra002073 Brassica rapa Bra002073 I 0.623
Bo1g006360 Brassica oleracea Bo1g006360 I 0.613
Bra011624 Brassica rapa Bra011624 I 0.613
Bo7g117500 Brassica oleracea Bo7g117500 I 0.613
Bra017723 Brassica rapa Bra017723 I 0.613
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.611
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.600
Bo7g014280 Brassica oleracea Bo7g014280 I 0.595
HMG-1 Pisum sativum Q41026_PEA D 0.582
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.582
PK29786.1 Cannabis sativa PK29786.1 I 0.579
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.578
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.577
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.576
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.576
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.576
HMGB2 Arabidopsis thaliana AT1G20693 I 0.576
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.576
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.576
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.573
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.572
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.572
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.572
Cla023817 Citrullus lanatus Cla023817 I 0.572
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.572
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.569
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.569
mgf009330m Mimulus guttatus mgf009330m I 0.569
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.569
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.569
Bo7g101270 Brassica oleracea Bo7g101270 I 0.569
HMGB1 Arabidopsis thaliana AT3G51880 I 0.569
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.566
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.560
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.560
Pm026798 Prunus mume Pm026798 I 0.560
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.559
Bo8g081200 Brassica oleracea Bo8g081200 I 0.557
Pm002934 Prunus mume Pm002934 I 0.557
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.557
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.557
MDP0000607529 Malus domestica MDP0000607529 I 0.555
mgf016363m Mimulus guttatus mgf016363m I 0.553
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.553
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.550
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.549
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.549
Ca_09896 Cicer arietinum Ca_09896 I 0.548
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.548
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.547
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.547
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.547
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.547
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.547
Si007288m.g Setaria italica Si007288m.g I 0.547
OS06G0728000 Oryza sativa OS06G0728000 I 0.547
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.547
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.547
OBART06G28090 Oryza barthii OBART06G28090 I 0.547
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.547
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.547
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.547
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.547
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.547
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.547
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.547
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.547
Bo8g070350 Brassica oleracea Bo8g070350 I 0.545
Ca_04825 Cicer arietinum Ca_04825 I 0.545
Bo7g061420 Brassica oleracea Bo7g061420 I 0.545
Ca_19340 Cicer arietinum Ca_19340 I 0.544
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.544
mgf014518m Mimulus guttatus mgf014518m I 0.543
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.542
HMGB3 Arabidopsis thaliana AT1G20696 I 0.542
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.542
Bra025838 Brassica rapa Bra025838 I 0.542
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.542
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.542
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.542
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.542
Cla009093 Citrullus lanatus Cla009093 I 0.541
OB06G35870 Oryza brachyantha OB06G35870 I 0.541
F775_27510 Aegilops tauschii F775_27510 I 0.541
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.541
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.541
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.541
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.541
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.541
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.541
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.540
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.540
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.540
TCM_000068 Theobroma cacao TCM_000068 I 0.538
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.537
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.537
Ca_10725 Cicer arietinum Ca_10725 I 0.537
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.537
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.537
mgf016608m Mimulus guttatus mgf016608m I 0.536
mgf006113m Mimulus guttatus mgf006113m I 0.536
mgf008076m Mimulus guttatus mgf008076m I 0.536
MDP0000275042 Malus domestica MDP0000275042 I 0.532
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.531
Ca_05351 Cicer arietinum Ca_05351 I 0.531
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.529
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.529
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.529
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.529
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.529
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.527
PK11149.1 Cannabis sativa PK11149.1 I 0.526
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.526
29701.m000600 Ricinus communis 29701.m000600 I 0.522
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.519
TCM_021706 Theobroma cacao TCM_021706 I 0.519
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.517
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.516
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.515
Bo5g030580 Brassica oleracea Bo5g030580 I 0.515
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.515
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.514
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.514
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.514
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.514
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.514
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.514
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.514
TCM_034406 Theobroma cacao TCM_034406 I 0.514
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.514
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.514
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.514
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.514
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.513
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.512
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.512
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.510
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.510
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.510
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.509
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.509
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.505
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.505
29669.m000844 Ricinus communis 29669.m000844 I 0.505
30170.m014386 Ricinus communis 30170.m014386 I 0.504
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.504
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.504
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.504
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.504
Cla018386 Citrullus lanatus Cla018386 I 0.504
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.504
Pm018913 Prunus mume Pm018913 I 0.504
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.504
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.504
MDP0000362980 Malus domestica MDP0000362980 I 0.504
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.504
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.504
MDP0000757111 Malus domestica MDP0000757111 I 0.504
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.504
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.504
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.504
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.503
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.494
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.494
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.487
Si031512m.g Setaria italica Si031512m.g I 0.485
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.485
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.485
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.485
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.483
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.483
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.483
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.482
OS09G0551600 Oryza sativa OS09G0551600 I 0.482
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.482
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.482
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.482
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.481
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.480
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.479
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.477
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.477
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.477
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.477
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.475
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.475
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.475
OB09G25530 Oryza brachyantha OB09G25530 I 0.475
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.470
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.470
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.469
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.469
TCM_042534 Theobroma cacao TCM_042534 I 0.463
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.459
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.457
F775_05073 Aegilops tauschii F775_05073 I 0.457
OB01G34910 Oryza brachyantha OB01G34910 I 0.457
mgf000913m Mimulus guttatus mgf000913m I 0.454
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.454
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.454
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.454
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.450
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.450
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.447
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.445
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.443
29600.m000548 Ricinus communis 29600.m000548 I 0.442
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.439
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.439
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.439
NCLIV_060790 Neospora caninum NCLIV_060790 N 0.433
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.433
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.433
TGME49_019830 Toxoplasma gondii TGME49_019830 N 0.433
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.431
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.431
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.430
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.429
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.428
Si003021m.g Setaria italica Si003021m.g N 0.428
Ca_05164 Cicer arietinum Ca_05164 N 0.428
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.428
Ca_05162 Cicer arietinum Ca_05162 N 0.428
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.427
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.427
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.427
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.426
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.426
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.426
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.424
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.423
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.423
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.423
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.420
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.417
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.417
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.417
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.415
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.415
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.415
29693.m002035 Ricinus communis 29693.m002035 N 0.415
TCM_029514 Theobroma cacao TCM_029514 N 0.415