AMTR_s00014p00061870 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00014p00061870 T326424_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERN09092 Sox 60 129

Links

Other Sox family TFs
Other Amborella trichopoda TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002035 Ricinus communis 29693.m002035 N 0.684
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.605
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.625
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.518
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.516
Bo4g182600 Brassica oleracea Bo4g182600 N 0.625
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.659
Bra021911 Brassica rapa Bra021911 N 0.625
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.623
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.659
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.659
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.645
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.439
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.634
Ca_05162 Cicer arietinum Ca_05162 N 0.650
Ca_05164 Cicer arietinum Ca_05164 N 0.650
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.423
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.676
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.638
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.728
F775_05073 Aegilops tauschii F775_05073 I 0.636
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.564
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.630
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.645
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.645
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.676
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.593
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.640
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.651
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.490
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.588
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.601
MDP0000143506 Malus domestica MDP0000143506 N 0.682
MDP0000170945 Malus domestica MDP0000170945 N 0.519
MDP0000392251 Malus domestica MDP0000392251 N 0.481
MDP0000695104 Malus domestica MDP0000695104 N 0.684
mgf009922m Mimulus guttatus mgf009922m N 0.610
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.647
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.614
OB01G34910 Oryza brachyantha OB01G34910 I 0.535
OBART01G25720 Oryza barthii OBART01G25720 N 0.518
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.518
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.518
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.676
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.518
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.518
OS01G0666200 Oryza sativa OS01G0666200 N 0.518
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.549
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.650
PK22924.1 Cannabis sativa PK22924.1 N 0.619
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.620
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.677
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.630
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.593
Si003021m.g Setaria italica Si003021m.g N 0.625
TCM_029514 Theobroma cacao TCM_029514 N 0.676
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.598
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.636