AMTR_s00046p00227790 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00046p00227790 T326428_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERN18092 Sox 8 77

Links

Other Sox family TFs
Other Amborella trichopoda TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.489
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.478
TCM_007659 Theobroma cacao TCM_007659 I 0.464
PPA14042 Pristionchus pacificus PPA14042 N 0.463
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.459
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.457
Cla009222 Citrullus lanatus Cla009222 I 0.457
MDP0000205665 Malus domestica MDP0000205665 I 0.457
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.454
ETH_00027140 Eimeria tenella ETH_00027140 I 0.452
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.451
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.448
Pm006054 Prunus mume Pm006054 I 0.447
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.447
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.441
30131.m007272 Ricinus communis 30131.m007272 I 0.441
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.440
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.438
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.438
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.435
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.435
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.432
Minc03634 Meloidogyne incognita Minc03634 N 0.420
Minc04648 Meloidogyne incognita Minc04648 N 0.420
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.420
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.420
estExt_Genewise1Plus.C_51175 Fragilariopsis cylindrus estExt_Genewise1Plus.C_51175 N 0.420
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.420
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.419
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.419
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.419
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.419
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.419
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.419
Z517_02317 Fonsecaea pedrosoi Z517_02317 I 0.419
G647_10093 Cladophialophora carrionii G647_10093 I 0.419
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.419
MCINX001064 Melitaea cinxia MCINX001064 I 0.419
EHI_045480 Entamoeba histolytica EHI_045480 N 0.419
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.419
A1O1_01197 Capronia coronata A1O1_01197 I 0.419
A1O3_08778 Capronia epimyces A1O3_08778 I 0.419
A1O5_06047 Cladophialophora psammophila A1O5_06047 I 0.419
EDI_049480 Entamoeba dispar EDI_049480 N 0.419
PV04_00198 Capronia semiimmersa PV04_00198 I 0.419
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.419
PV10_01993 Exophiala mesophila PV10_01993 I 0.419
PV11_09703 Exophiala sideris PV11_09703 I 0.419
PV07_09313 Cladophialophora immunda PV07_09313 I 0.419
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.419
PV06_04154 Exophiala oligosperma PV06_04154 I 0.419
Z519_04692 Cladophialophora bantiana Z519_04692 I 0.419
TCM_042534 Theobroma cacao TCM_042534 I 0.419
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.416
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.416
KGM_13852 Danaus plexippus KGM_13852 I 0.415