AMTR_s00078p00107740 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00078p00107740 T326431_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NHP6A
M01566_2.00
Saccharomyces cerevisiae
NHRYWWWN

NWWWRYDN
PBM
Zhu et al.(2009)
Nhp6a
0.470 0.478
NHP6A
M08606_2.00
Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN

NHNNHYWHTATATAWNNDHNH
Misc
DeBoer et al.(2011)
YPR052C_879
0.470 0.478
NHP6B
M01565_2.00
Saccharomyces cerevisiae
NNWHWRYDNN

NNHRYWDWNN
PBM
Zhu et al.(2009)
Nhp6b
0.464 0.449
NHP6B
M08603_2.00
Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN

NHNYWWWWTATAWWNDDAND
Misc
DeBoer et al.(2011)
YBR089C-A_792
0.464 0.449
NCU02819
M02490_2.00
Neurospora crassa
NNHNNNNNRN

NYNNNNNDNN
PBM
Weirauch et al.(2014)
pTH9672
0.457 0.391
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.436 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN03798 Sox 562 630

Links

Other Sox family TFs
Other Amborella trichopoda TFs

455 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I 0.000
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I 0.000
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I 0.000
BXY_1663900 Bursaphelenchus xylophilus BXY_1663900 N 0.000
CapteG177303 Capitella teleta CapteG177303 I 0.000
CBG09846 Caenorhabditis briggsae CBG09846 I 0.000
CBN10661 Caenorhabditis brenneri CBN10661 I 0.000
CRE25188 Caenorhabditis remanei CRE25188 I 0.000
GD19868 Drosophila simulans FBgn0191357 I 0.000
GE10213 Drosophila yakuba FBgn0228087 I 0.000
GF16659 Drosophila ananassae FBgn0093680 I 0.000
GG13368 Drosophila erecta FBgn0105640 I 0.000
GI24589 Drosophila mojavensis FBgn0147311 I 0.000
GM10889 Drosophila sechellia FBgn0165835 I 0.000
HelroG148423 Helobdella robusta HelroG148423 I 0.000
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I 0.000
Hr83 Drosophila melanogaster FBgn0037436 D 0.000
Hsal_03084--XP_001121181.1_APIME Harpegnathos saltator Hsal_03084--XP_001121181.1_APIME I 0.000
ISCW008659 Ixodes scapularis ISCW008659 I 0.000
L596_g19535 Steinernema carpocapsae L596_g19535 N 0.000
L798_08383 Zootermopsis nevadensis L798_08383 I 0.000
L889_g32531 Steinernema feltiae L889_g32531 I 0.000
L892_g29081 Steinernema scapterisci L892_g29081 N 0.000
LotgiG132791 Lottia gigantea LotgiG132791 I 0.000
nhr-239 Caenorhabditis elegans WBGene00021848 I 0.000
NV10871 Nasonia vitripennis NV10871 I 0.000
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I 0.000
PTRK_0000986400 Parastrongyloides trichosuri PTRK_0000986400 N 0.000
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I 0.000
SMAR006023 Strigamia maritima SMAR006023 I 0.000
SMUV_0000977701 Syphacia muris SMUV_0000977701 N 0.000
SPAL_0001030000 Strongyloides papillosus SPAL_0001030000 N 0.000
SPU_012586 Strongylocentrotus purpuratus SPU_012586 I 0.000
SSTP_0000371600 Strongyloides stercoralis SSTP_0000371600 N 0.000
SVE_0494600 Strongyloides venezuelensis SVE_0494600 N 0.000
TC010460 Tribolium castaneum TC010460 I 0.000
tetur01g07700 Tetranychus urticae tetur01g07700 I 0.000