AMTR_s00171p00070550 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00171p00070550 T326436_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.484 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN10245 Sox 111 181

Links

Other Sox family TFs
Other Amborella trichopoda TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.596
TCM_007659 Theobroma cacao TCM_007659 I 0.583
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.578
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.576
Cla009222 Citrullus lanatus Cla009222 I 0.576
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.570
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.557
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.553
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.553
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.553
Pm006054 Prunus mume Pm006054 I 0.553
Bo9g014140 Brassica oleracea Bo9g014140 I 0.549
Bo2g160920 Brassica oleracea Bo2g160920 I 0.549
Bra026498 Brassica rapa Bra026498 I 0.549
Bra029371 Brassica rapa Bra029371 I 0.549
30131.m007272 Ricinus communis 30131.m007272 I 0.548
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.540
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.539
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.539
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.536
MDP0000205665 Malus domestica MDP0000205665 I 0.534
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.533
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.531
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.531
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.531
TCM_042534 Theobroma cacao TCM_042534 I 0.528
Ca_05351 Cicer arietinum Ca_05351 I 0.528
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.524
mgf016363m Mimulus guttatus mgf016363m I 0.524
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.524
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.524
Pm002934 Prunus mume Pm002934 I 0.521
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.521
29701.m000600 Ricinus communis 29701.m000600 I 0.521
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.521
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.518
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.518
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.516
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.516
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.516
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.516
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.515
Ca_19340 Cicer arietinum Ca_19340 I 0.514
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.512
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.509
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.509
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.509
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.509
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.508
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.508
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.507
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.507
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.507
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.507
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.506
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.502
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.499
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.498
TCM_021706 Theobroma cacao TCM_021706 I 0.498
Cla023817 Citrullus lanatus Cla023817 I 0.498
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.498
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.498
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.495
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.495
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.495
OB06G35870 Oryza brachyantha OB06G35870 I 0.495
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.495
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.494
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.493
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.493
OBART08G00070 Oryza barthii OBART08G00070 I 0.493
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.493
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.493
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.493
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.493
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.493
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.493
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.493
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.493
OS08G0101100 Oryza sativa OS08G0101100 I 0.493
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.493
PK11149.1 Cannabis sativa PK11149.1 I 0.492
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.491
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.491
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.491
Ca_04825 Cicer arietinum Ca_04825 I 0.491
PK29786.1 Cannabis sativa PK29786.1 I 0.491
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.490
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.490
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.490
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.490
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.490
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.490
HMGB1 Arabidopsis thaliana AT3G51880 I 0.490
F775_27510 Aegilops tauschii F775_27510 I 0.490
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.490
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.490
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.489
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.489
Si007288m.g Setaria italica Si007288m.g I 0.489
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.489
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.489
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.489
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.489
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.489
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.489
OS06G0728000 Oryza sativa OS06G0728000 I 0.489
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.489
OBART06G28090 Oryza barthii OBART06G28090 I 0.489
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.489
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.489
Cla018386 Citrullus lanatus Cla018386 I 0.488
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.488
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.488
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.488
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.488
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.487
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.486
Ca_10725 Cicer arietinum Ca_10725 I 0.486
Bo7g101270 Brassica oleracea Bo7g101270 I 0.485
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.485
HMG-1 Pisum sativum Q41026_PEA D 0.484
MDP0000362980 Malus domestica MDP0000362980 I 0.482
Pm018913 Prunus mume Pm018913 I 0.482
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.482
MDP0000757111 Malus domestica MDP0000757111 I 0.482
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.480
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.478
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.478
Bo8g081200 Brassica oleracea Bo8g081200 I 0.477
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.477
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.476
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.476
OB08G10120 Oryza brachyantha OB08G10120 N 0.475
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.474
TCM_000068 Theobroma cacao TCM_000068 I 0.474
Bo7g014280 Brassica oleracea Bo7g014280 I 0.474
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.472
Cla009093 Citrullus lanatus Cla009093 I 0.471
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.471
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.470
HMGB2 Arabidopsis thaliana AT1G20693 I 0.469
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.469
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.469
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.469
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.469
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.469
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.467
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.466
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.466
Bra002073 Brassica rapa Bra002073 I 0.466
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.466
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.466
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.466
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.465
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.465
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.465
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.465
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.465
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.465
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.464
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.463
HMEL015307 Heliconius melpomene HMEL015307 N 0.463
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.461
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.460
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.460
TCM_034406 Theobroma cacao TCM_034406 I 0.460
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.460
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.460
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.460
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.460
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.459
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.457
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.457
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.457
Si031512m.g Setaria italica Si031512m.g I 0.457
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.455
30170.m014386 Ricinus communis 30170.m014386 I 0.455
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.455
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.455
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.455
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.454
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.454
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.453
mgf009124m Mimulus guttatus mgf009124m N 0.453
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.453
MDP0000275042 Malus domestica MDP0000275042 I 0.451
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.450
Bra037266 Brassica rapa Bra037266 I 0.449
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.449
PK03866.1 Cannabis sativa PK03866.1 I 0.448
Bo7g117500 Brassica oleracea Bo7g117500 I 0.448
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.448
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.448
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.448
Bra017723 Brassica rapa Bra017723 I 0.448
Bra011624 Brassica rapa Bra011624 I 0.448
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.448
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.448
Bo1g006360 Brassica oleracea Bo1g006360 I 0.448
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.448
HMGB7 Arabidopsis thaliana AT5G23420 N 0.447
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.447
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.447
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.447
GB54571 Apis mellifera GB54571 N 0.447
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.447
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.445
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.445
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.445
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.445
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.445
Si014434m.g Setaria italica Si014434m.g N 0.444
L798_13679 Zootermopsis nevadensis L798_13679 N 0.443
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.442
MDP0000607529 Malus domestica MDP0000607529 I 0.442
29600.m000548 Ricinus communis 29600.m000548 I 0.441
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.440
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.440
KGM_13851 Danaus plexippus KGM_13851 N 0.440
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.439
HMGB4 Arabidopsis thaliana AT2G17560 I 0.439
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.439
mgf006113m Mimulus guttatus mgf006113m I 0.438
mgf008076m Mimulus guttatus mgf008076m I 0.438
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.438
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.438
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.438
mgf016608m Mimulus guttatus mgf016608m I 0.438
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.437
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.437
mgf014518m Mimulus guttatus mgf014518m I 0.437
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.437
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.436
Bo8g070350 Brassica oleracea Bo8g070350 I 0.436
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.436
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.436
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.436
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.436
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.436
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.436
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.436
HMGB3 Arabidopsis thaliana AT1G20696 I 0.436
Bo7g061420 Brassica oleracea Bo7g061420 I 0.436
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.435
29669.m000844 Ricinus communis 29669.m000844 I 0.432
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.431
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.431
Bra025838 Brassica rapa Bra025838 I 0.431
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.431
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.430
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.430
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.430
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.430
F775_30706 Aegilops tauschii F775_30706 I 0.430
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.430
AAEL011425 Aedes aegypti AAEL011425 I 0.430
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.428
TC012866 Tribolium castaneum TC012866 N 0.426
Pm026798 Prunus mume Pm026798 I 0.426
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.426
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.425
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.424
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.424
GI18750 Drosophila mojavensis FBgn0141489 N 0.422
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.421
mgf009330m Mimulus guttatus mgf009330m I 0.421
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.420
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.420
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.419
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.419
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.419
OB09G25530 Oryza brachyantha OB09G25530 I 0.419
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.417