AMTR_s00171p00070550 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00171p00070550 T326436_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.484 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN10245 Sox 111 181

Links

Other Sox family TFs
Other Amborella trichopoda TFs

Invalid Input OrderBy

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action