AT2G34450 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT2G34450 T326477_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G34450.1 Sox 63 132
AT2G34450.2 Sox 63 133
AT2G34450.3 Sox 63 132
AT2G34450.4 Sox 63 132

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29693.m002035 Ricinus communis 29693.m002035 N 0.627
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.625
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.601
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.470
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.468
Bo4g182600 Brassica oleracea Bo4g182600 N 0.741
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.700
Bra021911 Brassica rapa Bra021911 N 0.741
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.569
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.700
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.700
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.647
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.629
Ca_05162 Cicer arietinum Ca_05162 N 0.658
Ca_05164 Cicer arietinum Ca_05164 N 0.658
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.635
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.630
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.632
F775_05073 Aegilops tauschii F775_05073 I 0.581
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.741
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.595
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.419
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.590
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.590
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.635
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.572
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.573
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.584
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.436
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.620
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.632
MDP0000143506 Malus domestica MDP0000143506 N 0.612
MDP0000170945 Malus domestica MDP0000170945 N 0.485
MDP0000392251 Malus domestica MDP0000392251 N 0.447
MDP0000695104 Malus domestica MDP0000695104 N 0.621
mgf009922m Mimulus guttatus mgf009922m N 0.555
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.592
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.622
OB01G34910 Oryza brachyantha OB01G34910 I 0.480
OBART01G25720 Oryza barthii OBART01G25720 N 0.470
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.470
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.470
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.635
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.470
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.470
OS01G0666200 Oryza sativa OS01G0666200 N 0.470
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.522
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.623
PK22924.1 Cannabis sativa PK22924.1 N 0.624
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.607
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.641
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.617
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.565
Si003021m.g Setaria italica Si003021m.g N 0.598
TCM_029514 Theobroma cacao TCM_029514 N 0.635
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.707
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.581